Gene detail

Detail information of GWHGAAZE017969

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002280504.1	1.1028E-179	PREDICTED: serine/threonine-protein kinase HT1 [Vitis vinifera]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	1E-54	Serine/threonine-protein kinase HT1
trEMBL	tr\|A5BI87\|A5BI87_VITVI	4E-180	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN63533.1}
TAIR10	AT5G50180.1	3E-117	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	13005140	13007949	+
GWHAAZE00000005	mRNA	13005140	13007949	+
GWHAAZE00000005	exon	13005140	13005155	+
GWHAAZE00000005	exon	13005489	13005621	+
GWHAAZE00000005	exon	13005717	13005912	+
GWHAAZE00000005	exon	13007163	13007287	+
GWHAAZE00000005	exon	13007385	13007543	+
GWHAAZE00000005	exon	13007635	13007949	+
GWHAAZE00000005	five_prime_UTR	13005140	13005155	+
GWHAAZE00000005	five_prime_UTR	13005489	13005585	+
GWHAAZE00000005	CDS	13005586	13005621	+
GWHAAZE00000005	CDS	13005717	13005912	+
GWHAAZE00000005	CDS	13007163	13007287	+
GWHAAZE00000005	CDS	13007385	13007543	+
GWHAAZE00000005	CDS	13007635	13007949	+

Transcript Sequence
>GWHTAAZE017991 AAGTATATGAAGGAAAATATAAGAACCAGAATGTTGCTATTAAAATTGGCCATAGAGGAGACACCCCAGAGGAAATTGCGAAAAGAGAAGTGCGCTTTGCCAGGGAGGTTGCCATGTTATCTAAAGTTCAACACAAGAACTTAGTAAAGTTTATTGGTGCGTGTAAGGAGCCTGTGATGGTGATAGTTACCGAGCTTTTATTAGGAGGGACGTTGCGTAAATATCTCCTAAACATGCGTCCAAGTTGCTTGGACATTCACGTAGTGGTTGGTTTTGCACTTGATATTGCTCGTGCAATTGAGTGTTTGCATTCTCATGGAATCATTCATCGTGATTTGAAGCCAGAAAACTTAATCTTGACAGCTGACCAGAAAACTGTTAAACTCGTGGATTTTGGTCTAGCAAGAGAGGAATCATTAACGGAGATGATGACCGCTGAAACAGGGACATATCGTTGGATGGCTCCAGAGTTGTACAGTACCGTTACGTTGAGGCATGGAGATAAGAAGCATTACAACCACAAAGTAGACGCATACAGTTTTGCCATCGTACTGTGGGAGCTCTTACACAACAAAGTCCCATTCGAAGGCATGTCCAATCTACAGGCCGCCTATGCTGCCGCCTTTAAAAATGTGAGGCCTTGTTTGGATAACCTCCCAGAGGAATTGGCCATAATTTTGAGTTCATGTTGGAGGGAAGATCCAAATACTCGGCCCAACTTCACCCAAATCGTACAAATGCTCGTTCATTATCTTTCAATAATATTGCCTCCCAAACCCTTGATTCCTTCTAGAATCTTTGCATCGGAGAACGCGGTCTTGGCACCAGAATCTCCTGGGACGAGCTCTTTGATTCCAATACGCAACGACTCTGAGGAAAACCCTAGAGCAGAGATGGACGATAAACCGAAAGGTTTCTTTTTCTGCTTCAACCAGTGTTATTAA

Network for GWHGAAZE017969

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	1	210	2.50E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-4

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.898
	SRR3591706	second leaf	32.171
	SRR3591707	mature leaf	6.460
	SRR3591708	Shoot apex	29.612
	SRR3591709	Stem	23.485
	SRR3591710	White floral bud	101.592
	SRR3591711	White flower	61.668
	SRR3591712	Green floral bud	71.009
	SRR3591713	Yellow flower	28.642
SRP173429	SRR8316895	Juvenile bud stage	30.306
	SRR8316896	Juvenile bud stage	39.580
	SRR8316897	Juvenile bud stage	14.328
	SRR8316894	Third green stage	34.387
	SRR8316900	Third green stage	112.690
	SRR8316901	Third green stage	112.817
	SRR8316898	Complete white stage	75.635
	SRR8316899	Complete white stage	192.764
	SRR8316903	Complete white stage	117.831
	SRR8316902	Silver flowering stage	103.028
	SRR8316904	Silver flowering stage	101.121
	SRR8316905	Silver flowering stage	43.816
	SRR8316906	Gold flowering stage	138.843
	SRR8316907	Gold flowering stage	176.096
	SRR8316908	Gold flowering stage	90.879
SRP132670	SRR6706286	Control	68.007
	SRR6706287	Light intensity 50%	81.504
	SRR6706288	Light intensity 20%	89.159
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.589
	CNS0095593	Slightly white alabastrum(diploid) 2	56.088
	CNS0095594	Slightly white alabastrum(diploid) 3	37.029
	CNS0095595	Whole white alabastrum(diploid) 2	45.421
	CNS0095596	Whole white alabastrum(diploid) 3	46.896
	CNS0095597	Whole white alabastrum(diploid) 4	49.352
	CNS0095598	Silvery flower (diploied) 1	35.537
	CNS0095599	Silvery flower (diploied) 2	38.088
	CNS0095600	Silvery flower (diploied) 3	46.735
	CNS0095601	Golden flower (diploid) 1	29.161
	CNS0095602	Golden flower (diploid) 2	28.372
	CNS0095603	Golden flower (diploid) 3	32.411
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.827
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.268
	CNS0095606	Slightly white alabastrum(tetraploid) 3	67.242
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.782
	CNS0095608	Whole white alabastrum(tetraploid) 2	27.137
	CNS0095609	Whole white alabastrum(tetraploid) 3	51.244
	CNS0095610	Silvery flower (tetraploid) 1	67.308
	CNS0095611	Silvery flower (tetraploid) 2	24.068
	CNS0095612	Silvery flower (tetraploid) 3	57.178
	CNS0095613	Golden flower (tetraploid) 1	25.278
	CNS0095614	Golden flower (tetraploid) 2	22.299
	CNS0095615	Golden flower (tetraploid) 3	26.941
CRA001975	CRR073297	Stem 1	50.761
	CRR073298	Stem 2	41.733
	CRR073299	Stem 3	19.912
	CRR073300	Leaf 1	99.258
	CRR073301	Leaf 2	85.879
	CRR073302	Leaf 3	56.602
	CRR073303	Juvenile bud 1	70.044
	CRR073304	Juvenile bud 2	32.669
	CRR073305	Juvenile bud 3	67.639
	CRR073306	Third green 1	20.319
	CRR073307	Third green 2	19.507
	CRR073308	Third green 3	24.900
	CRR073309	Second white 1	18.145
	CRR073310	Second white 2	18.462
	CRR073311	Second white 3	22.126
	CRR073312	Silver flowering 1	10.688
	CRR073313	Silver flowering 2	8.035
	CRR073314	Silver flowering 3	7.092
	CRR073315	Gold flowering 1	1.429
	CRR073316	Gold flowering 2	2.581
	CRR073317	Gold flowering 3	0.334
	CRR073318	Tawny withering 1	1.823
	CRR073319	Tawny withering 2	3.615
	CRR073320	Tawny withering 3	2.340