Gene detail

Detail information of GWHGAAZE017952

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010251124.1	PREDICTED: AP-1 complex subunit mu-2 [Nelumbo nucifera]
Swissprot	tr\|O22715\|AP1M2_ARATH	AP-1 complex subunit mu-2
trEMBL	tr\|D7SYS4\|D7SYS4_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI23375.3}
TAIR10	AT1G60780.1	Clathrin adaptor complexes medium subunit family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	12823700	12829677	-
GWHAAZE00000005	mRNA	12823700	12829677	-
GWHAAZE00000005	exon	12823700	12823798	-
GWHAAZE00000005	exon	12824003	12824125	-
GWHAAZE00000005	exon	12824223	12824364	-
GWHAAZE00000005	exon	12824693	12824790	-
GWHAAZE00000005	exon	12824989	12825085	-
GWHAAZE00000005	exon	12825221	12825328	-
GWHAAZE00000005	exon	12826485	12826588	-
GWHAAZE00000005	exon	12826881	12827057	-
GWHAAZE00000005	exon	12827151	12827213	-
GWHAAZE00000005	exon	12827316	12827462	-
GWHAAZE00000005	exon	12829311	12829413	-
GWHAAZE00000005	exon	12829538	12829677	-
GWHAAZE00000005	CDS	12829538	12829677	-
GWHAAZE00000005	CDS	12829311	12829413	-
GWHAAZE00000005	CDS	12827316	12827462	-
GWHAAZE00000005	CDS	12827151	12827213	-
GWHAAZE00000005	CDS	12826881	12827057	-
GWHAAZE00000005	CDS	12826485	12826588	-
GWHAAZE00000005	CDS	12825221	12825328	-
GWHAAZE00000005	CDS	12824989	12825085	-
GWHAAZE00000005	CDS	12824693	12824790	-
GWHAAZE00000005	CDS	12824223	12824364	-
GWHAAZE00000005	CDS	12824003	12824125	-
GWHAAZE00000005	CDS	12823700	12823798	-

Transcript Sequence
>GWHTAAZE017974 ATGGCGGGCGCCATCTCGGCGCTTTTTATTATGGACATGAAGGGCCGGTGCTTGATTAGCCGCGACTATCGAGGCGATGTCACCCTCGTTCAAGCCGAGAGATTCTTCTCCAGGTTCCTCGAGAAAGAGGTATTCTACGTGACTGCAAGAGGGCCATCACCGGGCCGTCATGGATTAGTTTCACCGTTTGTTGAGTTTCCTCCGCGGCCAACGTCGGCCATACCTGTATCGCATGCTGCCACGGGTGATGTAGAGTCTCAAGATCCGGTGAGCTATGACAATGGTGTGACCTACATTTTTATACAATACAATAACGTTTACTTGTTGACAACATCAAGGCAGAACTGCAATGCTGCTAGCCTCCTCCTCTTTTTGCACCGTGTTGTTGATGTTTTTAAGCACTATTTTAAAGAGTTGGAAGAGGAATCCCTTAGAGATAACTTTGTAGTAGTGTATGAATTGCTTGATGAAATGATGGATTTCGGTTACCCTCAATATACAGAAGCCAAAATTCTTAGCGAGTTTATCAAGACTGATGCTCACAGGTTGGAAGTTATGCAGCGGCCTCCCATGGCTGTAACAAATGCAGTGTCTTGGCGCGGTGAAGGAATTCATTACAAGAAAAACGAGATATTTTTGGATGTGGTGGAAAGTGTTAATCTACTAGTCAATAGCAATGGCCAAATAGTTCGTTCTGAAGTTGTTGGGGCATTAAAGATGAGGGCATATTTGAGTGGTATGCCAGATTGTAAGCTTGGCCTTAATGATAGAGTTCTACTGGAGACTAAAGGTGGACCGACAAGCGGAAAAGCTATTGATCTGGATGACATCAAATTTCATCAATGTGTACGTTTGGCTCGGTTCGAAAGTGACCGCACAATATCTTTTGTGCCCCCAGATGGATCATTTGATCTGATGACATATAGACTCAGTACCGAGGTGAAACCACTCATTTGGGTGGAAACTCAAGTTGAAAGGCATGCAAGAAGCCGGGTTGAGATCTTTGTAAAAGCCCAGAGCCTGTTCAAAGCGCGTTGCTCTGCAACCAATGTCGTAATGGAGTTACCCGTCCCATCTGATACGACAAAGCCTAGTATTAAGACGTCAACGGGATCTGCTAAATATGCCCCCGAAAAAGATGCATTAGTGTGGAAGATTAAAAAATTTCCTGGTAACAAGGACTATAAGTTACACGCAGAGTATAGACTTCCTAGTATAACTAATGAAGAAGCACCTCCTGACAAAAGAGCTCCTATTCGCCTGAAGTTTGAAATACCATATTTTACCGTCTCTGGAATTCAGGTTCGTTACATCAAAGTTATCGAGAGAAGTGGGTACCAGGCACTTCCATGGGTCAGATACATAACAATGGCTGGTGAATATGAACTAAGACTAATCTGA

Network for GWHGAAZE017952

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01217.21	Clat_adaptor_s	5	169	2.00E-07
PF00928.22	Adap_comp_sub	197	464	7.60E-91

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12393	AP1M	Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0030131	cellular_component	clathrin adaptor complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.112
	SRR3591706	second leaf	3.695
	SRR3591707	mature leaf	3.908
	SRR3591708	Shoot apex	10.364
	SRR3591709	Stem	6.885
	SRR3591710	White floral bud	10.352
	SRR3591711	White flower	11.696
	SRR3591712	Green floral bud	10.264
	SRR3591713	Yellow flower	9.277
SRP173429	SRR8316895	Juvenile bud stage	4.392
	SRR8316896	Juvenile bud stage	8.855
	SRR8316897	Juvenile bud stage	4.707
	SRR8316894	Third green stage	3.427
	SRR8316900	Third green stage	8.098
	SRR8316901	Third green stage	8.622
	SRR8316898	Complete white stage	0.619
	SRR8316899	Complete white stage	2.166
	SRR8316903	Complete white stage	1.777
	SRR8316902	Silver flowering stage	0.559
	SRR8316904	Silver flowering stage	1.063
	SRR8316905	Silver flowering stage	0.448
	SRR8316906	Gold flowering stage	2.667
	SRR8316907	Gold flowering stage	2.117
	SRR8316908	Gold flowering stage	4.657
SRP132670	SRR6706286	Control	3.844
	SRR6706287	Light intensity 50%	3.510
	SRR6706288	Light intensity 20%	3.615
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.701
	CNS0095593	Slightly white alabastrum(diploid) 2	5.957
	CNS0095594	Slightly white alabastrum(diploid) 3	8.321
	CNS0095595	Whole white alabastrum(diploid) 2	8.475
	CNS0095596	Whole white alabastrum(diploid) 3	10.393
	CNS0095597	Whole white alabastrum(diploid) 4	8.474
	CNS0095598	Silvery flower (diploied) 1	1.112
	CNS0095599	Silvery flower (diploied) 2	1.822
	CNS0095600	Silvery flower (diploied) 3	1.679
	CNS0095601	Golden flower (diploid) 1	3.361
	CNS0095602	Golden flower (diploid) 2	2.144
	CNS0095603	Golden flower (diploid) 3	1.562
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.120
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.726
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.734
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.419
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.621
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.932
	CNS0095610	Silvery flower (tetraploid) 1	1.832
	CNS0095611	Silvery flower (tetraploid) 2	2.095
	CNS0095612	Silvery flower (tetraploid) 3	3.050
	CNS0095613	Golden flower (tetraploid) 1	1.420
	CNS0095614	Golden flower (tetraploid) 2	1.792
	CNS0095615	Golden flower (tetraploid) 3	2.891
CRA001975	CRR073297	Stem 1	4.206
	CRR073298	Stem 2	2.763
	CRR073299	Stem 3	1.336
	CRR073300	Leaf 1	3.888
	CRR073301	Leaf 2	4.551
	CRR073302	Leaf 3	3.085
	CRR073303	Juvenile bud 1	2.076
	CRR073304	Juvenile bud 2	2.218
	CRR073305	Juvenile bud 3	0.130
	CRR073306	Third green 1	0.822
	CRR073307	Third green 2	1.062
	CRR073308	Third green 3	0.868
	CRR073309	Second white 1	0.479
	CRR073310	Second white 2	0.613
	CRR073311	Second white 3	0.430
	CRR073312	Silver flowering 1	2.218
	CRR073313	Silver flowering 2	1.032
	CRR073314	Silver flowering 3	0.915
	CRR073315	Gold flowering 1	3.720
	CRR073316	Gold flowering 2	2.913
	CRR073317	Gold flowering 3	1.459
	CRR073318	Tawny withering 1	1.069
	CRR073319	Tawny withering 2	1.892
	CRR073320	Tawny withering 3	1.360