Gene detail

Detail information of GWHGAAZE017938

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010663144.1	0	PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1 [Vitis vinifera]
Swissprot	tr\|Q39247\|2ABB_ARATH	0	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform
trEMBL	tr\|D7SHP1\|D7SHP1_VITVI	0	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B {ECO:0000256\|RuleBase:RU331113}
TAIR10	AT1G17720.2	3E-154	Protein phosphatase 2A, regulatory subunit PR55

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	12637891	12643026	+
GWHAAZE00000005	mRNA	12637891	12643026	+
GWHAAZE00000005	exon	12637891	12637944	+
GWHAAZE00000005	exon	12639196	12639357	+
GWHAAZE00000005	exon	12639483	12639590	+
GWHAAZE00000005	exon	12639712	12639831	+
GWHAAZE00000005	exon	12640329	12640508	+
GWHAAZE00000005	exon	12640618	12640709	+
GWHAAZE00000005	exon	12640959	12641077	+
GWHAAZE00000005	exon	12641267	12641390	+
GWHAAZE00000005	exon	12641484	12641607	+
GWHAAZE00000005	exon	12642042	12642110	+
GWHAAZE00000005	exon	12642313	12642404	+
GWHAAZE00000005	exon	12642542	12642616	+
GWHAAZE00000005	exon	12642694	12642752	+
GWHAAZE00000005	exon	12642890	12643026	+
GWHAAZE00000005	CDS	12637891	12637944	+
GWHAAZE00000005	CDS	12639196	12639357	+
GWHAAZE00000005	CDS	12639483	12639590	+
GWHAAZE00000005	CDS	12639712	12639831	+
GWHAAZE00000005	CDS	12640329	12640508	+
GWHAAZE00000005	CDS	12640618	12640709	+
GWHAAZE00000005	CDS	12640959	12641077	+
GWHAAZE00000005	CDS	12641267	12641390	+
GWHAAZE00000005	CDS	12641484	12641607	+
GWHAAZE00000005	CDS	12642042	12642110	+
GWHAAZE00000005	CDS	12642313	12642404	+
GWHAAZE00000005	CDS	12642542	12642616	+
GWHAAZE00000005	CDS	12642694	12642752	+
GWHAAZE00000005	CDS	12642890	12643026	+

Transcript Sequence
>GWHTAAZE017960 ATGACGTTGAGCTCGTCGGAGTTTTGTTCTGCTTTAGAGTGGAAATTCTCACAGACTAGTGTGACTTTTCCTCTCAAGATTTTGACCGCATGGTTTTTGGCTTTTCTTCTAGTTGATGTCATATCTGCAATCGAATTTGATAAGAGCGGTGATTATCTTGCTGTGGGAGATCGAGGTGGGCGTGTTGTAATTTTTGGAAGGAAGGCTGGTAAAGATGTAATAAATAAGGACCACTCTCGGAAAGAACTAGAGCAGTTAGATTTTGTGGTCAAACAGCATCCTGAGTTTCAATACAAGACCGAATTTCAGAGTCATGAACCTGAGTTTGATTATCTGAGGAGTTTGGAAATTGAAGAGAAGATCAACAAAGTGAGATGGTGTGCAACGCCCAATGGATCACTTTTTATTCTTTCAACAAATGATAAGACAATAAAACTGTGGAAGGTTAAGGAACATAAATTGAAAGAAGTCAAAGAAATGGGCCTTAATACAATTGTGTCTTCAGAGAATGCTCTTTTGGCAGAAAGGAGTTTTGTTAGTGCACAACGTAAATCATCTTCTCCTAATGGTTATTCTGAGAAAATGGAGAACAGCATGTTGCCATTTCATGTGGCACACTCGAGGGTAGCCAATAATGAAGATGCTGCTCCTGCAAGATGTCGAAAGGTGTATGCACATGCTCATGATTTTAATATTAATTCCATCTCAAATAACAGTGATGGTGAGACATTTCTTTCCGCCGATGACCTTAGGATCAATGTGTGGAACCTTGAGATCAGTGATCAGTGTTTCAATATCATTGACATGAAGCCGTCCAACATGGAGGATCTTACAGAGGTGATAACATCAGCTGAATTCCATCCACTTCACTGCAATATTCTCGCTTACAGCAGTTCAAGGGGTTTTATTCGACTGGTGGACATGCGGCAATCGGCGCTTTGTGATCACAGCGCTAAGATATTGCACAATGGAGAATCCCATGGGCTTAAAACTTTTTTCACAGAAATCATTGCATCCATATCTGATGTAAAGTTTGCACCTGATGGAAGACATATCTTAAGTCGTGACTACATGACCTTAAAGTTATGGGATACACGTATGGAGGCCTCTCCAGTTGCAACATACAAAATTCATGAGCATCTCCGCCCTAAGTTATGTGACTTGTATAATAATGACGCCATATTTGATAAGTTCGACTGTTGCCTCAGTGGAGATGGGATTCACTTTGCTACTGGATCTTATAGCAATATTCTGCGAATCTTTTCTTATGGAGCTGGAAATGAAGGACTAACATTGGAAGCTAGCAAAAGCCCGAACAGGAATCCACTTCTGCAACCTGCTCCAAGATCCAGAAGAGCATCTCTGAGCAACTTGACGCGGCATGGAATATCTAATACGGGAAGTGATGAATTTCCATGTAACATAAACTCAAAGTTGCTGCATCTGGCTTGGCATCCAAGAACCAATTTGATTGCTTGTGCTGCTGGAAATAGTTTGTTAATGTATTATACCTAG

Network for GWHGAAZE017938

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0175	GO:0000159 protein phosphatase type 2A complex GOslim:cellular_component GO:0005634 nucleus GOslim:cellular_component Transcription factor HB-KNOX family Transcription factor HB-KNOX Ubiquitin_F-box family Ubiquitin_F-box family Transcription factor SET family Transcription factor SET

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	220	256	0.11
PF00400.33	WD40	339	364	0.26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04354	PPP2R2	mRNA surveillance pathway	map03015
		Hippo signaling pathway	map04390
		Hippo signaling pathway - fly	map04391
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		Cell cycle - yeast	map04111
		Tight junction	map04530
		Adrenergic signaling in cardiomyocytes	map04261
		Dopaminergic synapse	map04728

Gene Ontology

GO term	Ontology	Name
GO:0000159	cellular_component	protein phosphatase type 2A complex
GO:0005515	molecular_function	protein binding
GO:0019888	molecular_function	protein phosphatase regulator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.180
	SRR3591706	second leaf	19.248
	SRR3591707	mature leaf	31.296
	SRR3591708	Shoot apex	12.505
	SRR3591709	Stem	7.367
	SRR3591710	White floral bud	4.521
	SRR3591711	White flower	5.157
	SRR3591712	Green floral bud	5.073
	SRR3591713	Yellow flower	4.003
SRP173429	SRR8316895	Juvenile bud stage	5.816
	SRR8316896	Juvenile bud stage	8.358
	SRR8316897	Juvenile bud stage	7.470
	SRR8316894	Third green stage	3.762
	SRR8316900	Third green stage	6.999
	SRR8316901	Third green stage	7.155
	SRR8316898	Complete white stage	1.724
	SRR8316899	Complete white stage	8.882
	SRR8316903	Complete white stage	3.137
	SRR8316902	Silver flowering stage	1.905
	SRR8316904	Silver flowering stage	2.567
	SRR8316905	Silver flowering stage	1.046
	SRR8316906	Gold flowering stage	3.091
	SRR8316907	Gold flowering stage	2.384
	SRR8316908	Gold flowering stage	6.316
SRP132670	SRR6706286	Control	4.941
	SRR6706287	Light intensity 50%	4.946
	SRR6706288	Light intensity 20%	4.639
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.212
	CNS0095593	Slightly white alabastrum(diploid) 2	5.617
	CNS0095594	Slightly white alabastrum(diploid) 3	5.813
	CNS0095595	Whole white alabastrum(diploid) 2	4.623
	CNS0095596	Whole white alabastrum(diploid) 3	3.482
	CNS0095597	Whole white alabastrum(diploid) 4	4.223
	CNS0095598	Silvery flower (diploied) 1	12.626
	CNS0095599	Silvery flower (diploied) 2	9.740
	CNS0095600	Silvery flower (diploied) 3	4.067
	CNS0095601	Golden flower (diploid) 1	11.371
	CNS0095602	Golden flower (diploid) 2	6.288
	CNS0095603	Golden flower (diploid) 3	5.259
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.991
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.966
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.307
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.325
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.626
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.048
	CNS0095610	Silvery flower (tetraploid) 1	8.097
	CNS0095611	Silvery flower (tetraploid) 2	5.601
	CNS0095612	Silvery flower (tetraploid) 3	3.777
	CNS0095613	Golden flower (tetraploid) 1	5.005
	CNS0095614	Golden flower (tetraploid) 2	5.356
	CNS0095615	Golden flower (tetraploid) 3	1.849
CRA001975	CRR073297	Stem 1	3.844
	CRR073298	Stem 2	3.852
	CRR073299	Stem 3	2.613
	CRR073300	Leaf 1	3.137
	CRR073301	Leaf 2	3.572
	CRR073302	Leaf 3	2.343
	CRR073303	Juvenile bud 1	2.020
	CRR073304	Juvenile bud 2	1.363
	CRR073305	Juvenile bud 3	2.829
	CRR073306	Third green 1	0.159
	CRR073307	Third green 2	0.383
	CRR073308	Third green 3	0.067
	CRR073309	Second white 1	0.534
	CRR073310	Second white 2	0.656
	CRR073311	Second white 3	0.652
	CRR073312	Silver flowering 1	0.056
	CRR073313	Silver flowering 2	0.409
	CRR073314	Silver flowering 3	0.440
	CRR073315	Gold flowering 1	9.902
	CRR073316	Gold flowering 2	12.428
	CRR073317	Gold flowering 3	6.011
	CRR073318	Tawny withering 1	3.633
	CRR073319	Tawny withering 2	4.561
	CRR073320	Tawny withering 3	2.090