Gene detail

Detail information of GWHGAAZE017937

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009618146.1	9.4609E-171	PREDICTED: cysteine-rich receptor-like protein kinase 42 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9LMB9\|CRK1_ARATH	8E-76	Cysteine-rich receptor-like protein kinase 1 (Precursor)
trEMBL	tr\|M1BJC8\|M1BJC8_SOLTU	1E-175	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400046620}
TAIR10	AT1G19090.1	7E-94	receptor-like serine/threonine kinase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	12632602	12636192	+
GWHAAZE00000005	mRNA	12632602	12636192	+
GWHAAZE00000005	exon	12632602	12633120	+
GWHAAZE00000005	exon	12633529	12633784	+
GWHAAZE00000005	exon	12634324	12634443	+
GWHAAZE00000005	exon	12634544	12634669	+
GWHAAZE00000005	exon	12634992	12635226	+
GWHAAZE00000005	exon	12635398	12635542	+
GWHAAZE00000005	exon	12635827	12636192	+
GWHAAZE00000005	CDS	12632602	12633120	+
GWHAAZE00000005	CDS	12633529	12633784	+
GWHAAZE00000005	CDS	12634324	12634443	+
GWHAAZE00000005	CDS	12634544	12634669	+
GWHAAZE00000005	CDS	12634992	12635226	+
GWHAAZE00000005	CDS	12635398	12635542	+
GWHAAZE00000005	CDS	12635827	12636192	+

Transcript Sequence
>GWHTAAZE017959 ATGCATTGTTCAACCCTAATTCTCCAACACCTTAGTTTCATAATACTACTGTTATCAATTTTCTCCTTCTCCGCTTCTCTTTCCAATCCCCGCAACTCAATCGCAGACATATACTGCCAACTCTCCAACGGAGATGAAAACGATGAATTTGTCTCCAATTACATCACCGTCATGAAAGGATTAACCAATCGAATCCCCACACATTATTACGCAAATTACACCACTAAATCCCACAACAACAGTGTTTATGGATTCGCACAGTGCCATAGCGACCTCAATCGGATCGAATGCCATCAATGCTTTGATAAAGCCAAACAGTTGCTCGATCGGTGCCTCCCTGGGGCTGGAGGCCGAATCTACCTCGATGGTTGCTTTATACGATACGACACGTATGAATTCTACGGTGAGAGTATTAATAAAGGATACGATTCGACCAAGTGTGGGGCTCCCACGGAGAATCTGAATGATGATTATATGCAGAGGGAGTTTGCCGAGAAGCTGTATCAAGCCATGGGGAAGGTGATATCAATGGCAATGGAGAACGGAGGTTTTGGGGCGGCGGAGGTGAAAAGTGGGGTGGTGACGGCTTATGCATTGGGGCAGTGTTGGAATACTGTAGATAAGAGTGGATGTAACAGGTGTTTGAAGGATGCGGAGGAGAAGGTGAGGAAATGCATACCCGGTTCAGAGGGGAGGGCTTTGAATGCTGGTTGTTATTTGAGGTATTCAACTCAGAAGTTCTTTGATGAAGATGCTGTCACAAGGAAATATATCGAACGGGGCTTCTCTGAATCCGTGATCATCATTATAGCAATCGCGTTATCCTTTGTCTTTCTTCTGCTCTCTCTCTTTGGTGCTTTTGTAGGCTACAAAAGATATTTGAAGAGAAAAGGAGAGAAACAAAAAACTGATCGACTTCCATCTATGGTAAACAAGTCTGGTTTACATTTCAACTATGAAATGCTTGAGCAAGCAACTGAGGGTTTCAGTTCCTTGAATAAATTAGGCCAAGGAGGAGCCGATAAGAATAGGACTCAAACTCTTAGTTGGCAGCAGAGATTCAATATCATATTGGGAATAGCAGAGGGGCTAGCGTATCTTCACTGTGGTTGTCAAGAAAAAATAATCCATAGAGATATTAAAAACAGCAACATTCTTCTCGATGAAAACCTCACTCCAAAAATTTCTGATTTCGGACTTGCTCGATGTGTTACTCCTAACAAAACTCATATTAGCACTGCCATAGCCGGCACTCTGGGATATATGGCTCCGGAATATCTTGTTCGGGGACAACTAAGTGAAAAGACAGATGTGTATGCTTTCGGGGTGCTTTCTCTAGAGATTTCATGTGGCAGGAAGAACAATGTTTTTGTGCATGACTTGGAATCAGTTTTACATTGCGTGTGGAAGAATTACAAGTCAAACGAAATTAAGGAATCCATTGACAGCAACTTGGAAGGCGATTTTGAAGAAAAGGAAGCGTCGACCACTCTTCTAGTTGGGCTAATGTGCACCCAAACAAACGCCAACTTAAGACCGTCCATGTCTCAAGTAGTTGAAATGCTAACCAATAAAAAGATTACACTTCCTTTGCCACAACAAGCTCCATTCAACAATTCTAGTTTCCTACTCTCCGATGATACGACCAAGTCATCTATAATGAACAGTTCTTCCTCAAATTGGCACACTACTAATACTACATCTTCCTCAGAGTCCTTCGTCTCGATGGCCACCGCTAAATCTCATTCTTTAATTGAAAATGTGTGA

Network for GWHGAAZE017937

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01657.18	Stress-antifung	42	131	3.10E-13
PF01657.18	Stress-antifung	160	245	5.80E-10
PF00069.26	Pkinase	344	520	7.80E-29

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.233
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.066
	SRR3591708	Shoot apex	0.033
	SRR3591709	Stem	0.657
	SRR3591710	White floral bud	59.152
	SRR3591711	White flower	2.961
	SRR3591712	Green floral bud	40.083
	SRR3591713	Yellow flower	1.719
SRP173429	SRR8316895	Juvenile bud stage	5.827
	SRR8316896	Juvenile bud stage	16.924
	SRR8316897	Juvenile bud stage	5.947
	SRR8316894	Third green stage	5.630
	SRR8316900	Third green stage	28.270
	SRR8316901	Third green stage	28.859
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.533
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.753
	SRR8316904	Silver flowering stage	1.680
	SRR8316905	Silver flowering stage	0.636
	SRR8316906	Gold flowering stage	0.349
	SRR8316907	Gold flowering stage	0.239
	SRR8316908	Gold flowering stage	0.209
SRP132670	SRR6706286	Control	8.001
	SRR6706287	Light intensity 50%	7.917
	SRR6706288	Light intensity 20%	7.792
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.950
	CNS0095593	Slightly white alabastrum(diploid) 2	26.335
	CNS0095594	Slightly white alabastrum(diploid) 3	43.666
	CNS0095595	Whole white alabastrum(diploid) 2	67.104
	CNS0095596	Whole white alabastrum(diploid) 3	73.344
	CNS0095597	Whole white alabastrum(diploid) 4	88.080
	CNS0095598	Silvery flower (diploied) 1	3.126
	CNS0095599	Silvery flower (diploied) 2	12.051
	CNS0095600	Silvery flower (diploied) 3	2.178
	CNS0095601	Golden flower (diploid) 1	3.893
	CNS0095602	Golden flower (diploid) 2	2.001
	CNS0095603	Golden flower (diploid) 3	2.232
	CNS0095604	Slightly white alabastrum(tetraploid) 1	43.292
	CNS0095605	Slightly white alabastrum(tetraploid) 2	45.590
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.125
	CNS0095607	Whole white alabastrum(tetraploid) 1	67.091
	CNS0095608	Whole white alabastrum(tetraploid) 2	83.245
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.149
	CNS0095610	Silvery flower (tetraploid) 1	1.324
	CNS0095611	Silvery flower (tetraploid) 2	5.752
	CNS0095612	Silvery flower (tetraploid) 3	13.477
	CNS0095613	Golden flower (tetraploid) 1	1.770
	CNS0095614	Golden flower (tetraploid) 2	0.350
	CNS0095615	Golden flower (tetraploid) 3	5.924
CRA001975	CRR073297	Stem 1	4.809
	CRR073298	Stem 2	4.987
	CRR073299	Stem 3	1.752
	CRR073300	Leaf 1	19.151
	CRR073301	Leaf 2	12.886
	CRR073302	Leaf 3	5.207
	CRR073303	Juvenile bud 1	13.734
	CRR073304	Juvenile bud 2	7.733
	CRR073305	Juvenile bud 3	2.333
	CRR073306	Third green 1	8.301
	CRR073307	Third green 2	7.620
	CRR073308	Third green 3	6.993
	CRR073309	Second white 1	0.229
	CRR073310	Second white 2	2.170
	CRR073311	Second white 3	2.013
	CRR073312	Silver flowering 1	7.592
	CRR073313	Silver flowering 2	8.365
	CRR073314	Silver flowering 3	3.264
	CRR073315	Gold flowering 1	5.235
	CRR073316	Gold flowering 2	2.969
	CRR073317	Gold flowering 3	0.609
	CRR073318	Tawny withering 1	10.384
	CRR073319	Tawny withering 2	7.862
	CRR073320	Tawny withering 3	8.683