Gene detail

Detail information of GWHGAAZE017908

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007036199.1	0	Serine/threonine-protein kinase HT1 [Theobroma cacao]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	1E-140	Serine/threonine-protein kinase HT1
trEMBL	tr\|A0A061FTL2\|A0A061FTL2_THECC	0	Serine/threonine-protein kinase HT1 {ECO:0000313\|EMBL:EOY20700.1}
TAIR10	AT1G62400.1	1E-114	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	12387782	12392109	+
GWHAAZE00000005	mRNA	12387782	12392109	+
GWHAAZE00000005	exon	12387782	12388147	+
GWHAAZE00000005	exon	12389758	12390213	+
GWHAAZE00000005	exon	12391864	12392109	+
GWHAAZE00000005	CDS	12387782	12388147	+
GWHAAZE00000005	CDS	12389758	12390213	+
GWHAAZE00000005	CDS	12391864	12392109	+

Transcript Sequence
>GWHTAAZE017928 ATGAAGAATTTTTACTGGTTTAAGCAGATTGCCAATAATGGCAGCAACAAACTCGAGAGGCGACTCTCTCTCGGCGAATACAAGCGAGCAGTTTCGTGGTCCAAGTACTTGGTTTCTTCTGGTGCTGAGATAAAAGGAGAAGGAGAAGAGGAATGGAGCGCGGATATGTCGCAGTTGTTTATAGGGAATAAGTTTGCATCCGGGAGGCATAGTAGGATCTATAGAGGGGTATACAAGCAGAGGGATGTCGCGATTAAGCTTATAAGTCAGCCTGAGGAAGATGGTGATTTGGCTGCTTATTTAGAGAAACAGTTCACTTCCGAGGTTGCTTTGTTGTTTCGATTGCATCATCCTAATATACTCACATTTTTTGCAGCATGTAAGAAACCCCCTGTATTTTGTATCATCACCGAGTACTTGGCTGGGGGCTCCCTGAGGAAATTTCTTCATCAGCAGGAGCCATATTCAGTTCCATTTCACCTGGTTCTCAGGCTTGCCCTTGACATTGCACGGGGAATGCAATATCTTCATTCTCAGGGGATACTTCACAGGGATCTCAAATCAGAAAATCTACTGCTTGATGAAGATATGTGTGTGAAGGTAGCAGATTTTGGCATTTCATGTTTAGAATCTCAGTGTGGCAGTGCAAAAGGATTCACAGGTACTTATCGCTGGATGGCACCAGAAATGATCAAAGAAAAGCACCATACAAAGAAAGTTGACGTTTACAGTTTTGGCATTGTATTGTGGGAGCTTTTAACTGCGTTGACACCATTTGACAACATGACTCCAGAACAGGCTGCGTTTGCAGTCTGCCAGAAGAATGCTAGACCGCCATTGCCGTCTGAATGTCCAACAACATTTTGCCATCTCATCAAGCGATGCTGGTCAGGTAATCCGGGTAAGAGGCCGCATTTTAAGGAGATTGTTACCATTCTGGAAGGTTATGTTGAGTCCCTTGAGCACGATCCAGATTTCTTTTTATCCTGCAAACCTGCAGGTTATCATAGGTTTTCACGGTTCTTACCCAAATGTATTGCTCGCTGTAGTTCTTCTTTAGGAGCATAA

Network for GWHGAAZE017908

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	61	313	2.00E-64

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-4

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	92.411
	SRR3591706	second leaf	45.929
	SRR3591707	mature leaf	35.054
	SRR3591708	Shoot apex	50.549
	SRR3591709	Stem	139.686
	SRR3591710	White floral bud	56.488
	SRR3591711	White flower	50.004
	SRR3591712	Green floral bud	88.054
	SRR3591713	Yellow flower	20.135
SRP173429	SRR8316895	Juvenile bud stage	27.694
	SRR8316896	Juvenile bud stage	37.516
	SRR8316897	Juvenile bud stage	15.400
	SRR8316894	Third green stage	21.912
	SRR8316900	Third green stage	110.476
	SRR8316901	Third green stage	101.110
	SRR8316898	Complete white stage	47.940
	SRR8316899	Complete white stage	194.161
	SRR8316903	Complete white stage	53.358
	SRR8316902	Silver flowering stage	37.088
	SRR8316904	Silver flowering stage	40.388
	SRR8316905	Silver flowering stage	25.054
	SRR8316906	Gold flowering stage	52.392
	SRR8316907	Gold flowering stage	35.799
	SRR8316908	Gold flowering stage	36.318
SRP132670	SRR6706286	Control	87.208
	SRR6706287	Light intensity 50%	93.215
	SRR6706288	Light intensity 20%	100.303
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	57.045
	CNS0095593	Slightly white alabastrum(diploid) 2	106.030
	CNS0095594	Slightly white alabastrum(diploid) 3	50.804
	CNS0095595	Whole white alabastrum(diploid) 2	76.032
	CNS0095596	Whole white alabastrum(diploid) 3	79.992
	CNS0095597	Whole white alabastrum(diploid) 4	76.498
	CNS0095598	Silvery flower (diploied) 1	37.974
	CNS0095599	Silvery flower (diploied) 2	40.642
	CNS0095600	Silvery flower (diploied) 3	43.483
	CNS0095601	Golden flower (diploid) 1	27.882
	CNS0095602	Golden flower (diploid) 2	29.770
	CNS0095603	Golden flower (diploid) 3	26.588
	CNS0095604	Slightly white alabastrum(tetraploid) 1	94.028
	CNS0095605	Slightly white alabastrum(tetraploid) 2	80.366
	CNS0095606	Slightly white alabastrum(tetraploid) 3	147.526
	CNS0095607	Whole white alabastrum(tetraploid) 1	50.745
	CNS0095608	Whole white alabastrum(tetraploid) 2	61.636
	CNS0095609	Whole white alabastrum(tetraploid) 3	100.882
	CNS0095610	Silvery flower (tetraploid) 1	32.967
	CNS0095611	Silvery flower (tetraploid) 2	40.223
	CNS0095612	Silvery flower (tetraploid) 3	40.729
	CNS0095613	Golden flower (tetraploid) 1	18.757
	CNS0095614	Golden flower (tetraploid) 2	36.448
	CNS0095615	Golden flower (tetraploid) 3	19.258
CRA001975	CRR073297	Stem 1	60.493
	CRR073298	Stem 2	62.146
	CRR073299	Stem 3	52.779
	CRR073300	Leaf 1	124.552
	CRR073301	Leaf 2	115.136
	CRR073302	Leaf 3	111.615
	CRR073303	Juvenile bud 1	128.963
	CRR073304	Juvenile bud 2	149.240
	CRR073305	Juvenile bud 3	150.188
	CRR073306	Third green 1	190.217
	CRR073307	Third green 2	112.403
	CRR073308	Third green 3	151.256
	CRR073309	Second white 1	98.541
	CRR073310	Second white 2	58.747
	CRR073311	Second white 3	29.573
	CRR073312	Silver flowering 1	14.240
	CRR073313	Silver flowering 2	16.922
	CRR073314	Silver flowering 3	9.405
	CRR073315	Gold flowering 1	20.862
	CRR073316	Gold flowering 2	22.325
	CRR073317	Gold flowering 3	22.071
	CRR073318	Tawny withering 1	30.580
	CRR073319	Tawny withering 2	35.731
	CRR073320	Tawny withering 3	42.122