Gene detail

Detail information of GWHGAAZE017901

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283021.1	0	PREDICTED: serine/threonine-protein kinase HT1-like [Vitis vinifera]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	8E-65	Serine/threonine-protein kinase HT1
trEMBL	tr\|M1CKG3\|M1CKG3_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400069449}
TAIR10	AT5G50000.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	12289106	12292878	-
GWHAAZE00000005	mRNA	12289106	12292878	-
GWHAAZE00000005	exon	12289106	12289312	-
GWHAAZE00000005	exon	12289466	12289600	-
GWHAAZE00000005	exon	12290917	12291091	-
GWHAAZE00000005	exon	12291339	12291535	-
GWHAAZE00000005	exon	12291765	12291886	-
GWHAAZE00000005	exon	12292554	12292878	-
GWHAAZE00000005	CDS	12292554	12292878	-
GWHAAZE00000005	CDS	12291765	12291886	-
GWHAAZE00000005	CDS	12291339	12291535	-
GWHAAZE00000005	CDS	12290917	12291091	-
GWHAAZE00000005	CDS	12289466	12289600	-
GWHAAZE00000005	CDS	12289106	12289312	-

Transcript Sequence
>GWHTAAZE017921 ATGAAGGAGAGCGGTGATGGGTTTGTTAGGGCAGATCAGATTGATCTGAAGAGTTTAGATGAGCAACTGGAACGCCACCTCAATAGAGTAAGGACCATGGAGAATAACAACGGCAAGAAGCGCGACTCTGATGATCCCACCTCAACCACAACCACAACCACAACCTCAACCTCCGCTGCCACCACCCTTTCGCCGGCGATCGCCACCAACAGGCAAAGACAGGACTGGGAGATCGATCCCTCCAAGCTTATAATCAAGAGCGTCATTGCACGCGGCACTTTCGGCACCGTCCATCGTGGCATCTACGACGGCCTAGATGTCGCCGTTAAACTGCTAGACTGGGGGGAAGAGGGCCACAGGACAGACGCCGAAATAGCATCGTTGAGGGCGGCTTTTACTCAAGAAGTCGCAGTGTGGCATAAGCTTGACCATCCTAATGTAACTAAGTTTATTGGGGCGACAATGGGATCTTCAGGGCTAAACATACAAACAGAAAACGGCCACATGGGAATGCCAAGTAACATTTGTTGTGTTGTTGTTGAATATCTTCCTGGGGGTGCGCTGAAATCGTACCTCATTAAAAACAGGAGAAGGAAGCTTGCTTTCAAAGTTGTTGTTCAGATTGCACTCGATCTTGCAAGAGGGTTAAGTTACCTCCACTCTCAGAAAATTGTACACAGAGATGTAAAGACAGAGAACATGCTGTTGGATAAAACACGAACTTTGAAAATAGCCGATTTTGGGGTTGCTCGTGTTGAGGCCTCCAATCCAAATGATATGACAGGAGAGACTGGGACCCTTGGCTATATGGCCCCTGAGGTTCTGAATGGCAACCCATATAACAGGAAATGTGATGTGTATAGTTTCGGCATTTGTTTATGGGAGATATATTGCTGTGACATGCCGTATCCCGACCTTAGTTTCTCAGAAGTTACGTCTGCTGTAGTACGCCAGAATTTGCGGCCGGAAATACCGAGGTGTTGCCCTAGTTCTCTAGCAAACGTGATGAAACGGTGCTGGGATGCTAACCCAGACAAGCGGCCTGAAATGGATGAAGTAGTTTCGTTGATAGAGGCCATTGACACATCAAAAGGGGGAGGCATGATCCCTGGTGATCAGCCTCAAGGTTGCCTCTGCTTTCGCAAGTATCGAGGCCCTTGA

Network for GWHGAAZE017901

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	85	355	8.80E-63

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-4

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	46.613
	SRR3591706	second leaf	16.423
	SRR3591707	mature leaf	10.517
	SRR3591708	Shoot apex	20.112
	SRR3591709	Stem	24.970
	SRR3591710	White floral bud	73.433
	SRR3591711	White flower	43.022
	SRR3591712	Green floral bud	43.987
	SRR3591713	Yellow flower	25.659
SRP173429	SRR8316895	Juvenile bud stage	21.015
	SRR8316896	Juvenile bud stage	24.017
	SRR8316897	Juvenile bud stage	14.953
	SRR8316894	Third green stage	15.197
	SRR8316900	Third green stage	37.272
	SRR8316901	Third green stage	47.910
	SRR8316898	Complete white stage	48.374
	SRR8316899	Complete white stage	86.230
	SRR8316903	Complete white stage	80.100
	SRR8316902	Silver flowering stage	41.651
	SRR8316904	Silver flowering stage	60.532
	SRR8316905	Silver flowering stage	32.040
	SRR8316906	Gold flowering stage	70.669
	SRR8316907	Gold flowering stage	62.559
	SRR8316908	Gold flowering stage	55.471
SRP132670	SRR6706286	Control	62.647
	SRR6706287	Light intensity 50%	62.171
	SRR6706288	Light intensity 20%	59.094
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.148
	CNS0095593	Slightly white alabastrum(diploid) 2	34.034
	CNS0095594	Slightly white alabastrum(diploid) 3	26.647
	CNS0095595	Whole white alabastrum(diploid) 2	28.868
	CNS0095596	Whole white alabastrum(diploid) 3	19.269
	CNS0095597	Whole white alabastrum(diploid) 4	28.184
	CNS0095598	Silvery flower (diploied) 1	31.356
	CNS0095599	Silvery flower (diploied) 2	34.299
	CNS0095600	Silvery flower (diploied) 3	61.098
	CNS0095601	Golden flower (diploid) 1	25.247
	CNS0095602	Golden flower (diploid) 2	43.584
	CNS0095603	Golden flower (diploid) 3	42.581
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.418
	CNS0095605	Slightly white alabastrum(tetraploid) 2	26.560
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.359
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.561
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.426
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.547
	CNS0095610	Silvery flower (tetraploid) 1	46.111
	CNS0095611	Silvery flower (tetraploid) 2	50.838
	CNS0095612	Silvery flower (tetraploid) 3	69.371
	CNS0095613	Golden flower (tetraploid) 1	21.379
	CNS0095614	Golden flower (tetraploid) 2	33.608
	CNS0095615	Golden flower (tetraploid) 3	57.382
CRA001975	CRR073297	Stem 1	32.118
	CRR073298	Stem 2	34.963
	CRR073299	Stem 3	36.101
	CRR073300	Leaf 1	60.482
	CRR073301	Leaf 2	60.292
	CRR073302	Leaf 3	54.389
	CRR073303	Juvenile bud 1	53.909
	CRR073304	Juvenile bud 2	56.095
	CRR073305	Juvenile bud 3	82.701
	CRR073306	Third green 1	84.502
	CRR073307	Third green 2	72.028
	CRR073308	Third green 3	67.073
	CRR073309	Second white 1	42.994
	CRR073310	Second white 2	41.820
	CRR073311	Second white 3	40.320
	CRR073312	Silver flowering 1	28.195
	CRR073313	Silver flowering 2	25.681
	CRR073314	Silver flowering 3	24.417
	CRR073315	Gold flowering 1	11.296
	CRR073316	Gold flowering 2	10.852
	CRR073317	Gold flowering 3	9.122
	CRR073318	Tawny withering 1	19.966
	CRR073319	Tawny withering 2	14.917
	CRR073320	Tawny withering 3	22.746