Gene detail

Detail information of GWHGAAZE017895

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010663195.1	0	PREDICTED: probable inactive receptor kinase At2g26730 [Vitis vinifera]
Swissprot	tr\|Q9LVM0\|Y5830_ARATH	7E-92	Probable inactive receptor kinase At5g58300 (Precursor)
trEMBL	tr\|A0A061G0X7\|A0A061G0X7_THECC	0	Leucine-rich repeat protein kinase family protein {ECO:0000313\|EMBL:EOY20659.1}
TAIR10	AT2G26730.1	4E-58	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	12238653	12240673	+
GWHAAZE00000005	mRNA	12238653	12240673	+
GWHAAZE00000005	exon	12238653	12239361	+
GWHAAZE00000005	exon	12239454	12239912	+
GWHAAZE00000005	exon	12240069	12240673	+
GWHAAZE00000005	CDS	12238653	12239361	+
GWHAAZE00000005	CDS	12239454	12239912	+
GWHAAZE00000005	CDS	12240069	12240673	+

Transcript Sequence
>GWHTAAZE017915 ATGGACCGAGTCTCTCTCTGGGCAGTGCTTGTTCTCTCTCTCCTGTTCTCCGTATCGAATTCAGAACAGGATGTGAGGGTGGCTTTGGCTGAATTCATGTCGAAGCTATATCCTATTAACATTCGAAATGACCCGAACTGGGGTTGGAATGCGAGCTCAGACCCCTGCACAGACAAGTGGGCAGGGGTTACCTGTGATACCAAGCAACAGGCTGTGAAGAAAATAGTGCTTGATCAGCTCAACTTCACTGGAGTTCTTGATGCCACTTCTCTCTGCCGGGCAAGTGACTCTCTCCTTGTACTGAGCCTAAATGACAACAATGTCGCCGGTGACTTGCCTGAAGAGATATTGGCCTGTAAATATCTCACTCACTTGTATCTACGAGGCAACAGTTTCTCCGGAAGCCTTCCTGGTTCTCTATCCCGGTTAAGTAACTTGAAAAGGCTTGATATCTCCAATAACGATTTCTCGGAAGAGATGCCTGACATGTCAAGAATCACGGGTTTGCTAACATTCCTAGGTCAAAACAATCAGTTCAGTGGAAAAATACCACAATTTAATTTTTTCAGCCTCGTAGAATTCAATGTCTCCAACAACAACCTAAGTGGTAAAATTCCAGACGTCGAAGGTCATTTCAACTTAAGCAGCTTCCTCGGCAATCCTCTTCTATGCGGAGAGCCATTGTTGAATTCATGTTCAAAATCACGAATTATCAAGAACAAAAAGCCTAAAGCCAAGAAGAAGAAGAAGGCCAATGTAGACACCAACAGTGGTGGTTCGAATGAGTTTAAGAACAGAGGGAACCGGTCAGAGTATTCGATATCAGCCGAAAGTGGGTTGGCCTCATCGTCACTTGTGGTTCTTTCAAGTACACCGGTGGTGAACGGGATAAGATTTGAGGACTTGCTTCGGGCTCCGGCTGAATTGATTGAACAAGGAAAGCACGGAAGCCTCTACAAGGTGGAACCTGAGGGCGGTGCAACCCTCGTTGTAAAAAGGATCAAGGATTGGGGAATTTCAAGAGAAGATTTCAAGAAGAGGATGGTGAGGGTAAACCAAGTGAAGCACCCTAAAGTACTACCAGTTATTGCCTATTACTGTTCCAAGCAAGAGAAGCTCTTGGTTTATGAGTATCAGCAAAAAGGCAGTCTCTTCAAGCTTCTCCGTGGATCAAATAATGGGCAATTGTTTGACTGGGGAAGCAGAATAATCATAGCAGCTAGCGTTGCCGAGGCATTGGGATTCATGCACAAGGAGCTTCAGGTTGATGGGATTGCTCACGGTAACCTTAAATCGACCAATATTTTGCTGAAAGACAATATGGATCCGTGTATAAGCGAATATGGTCTAATGGTGGTCGAAAATCAAGGGCAGTCATTTAATTCCGAAGTCGACAATTTAAAGAAAAAGGATCCAACTGGTGGGCAGGCTTATAGTACATTCAAGGTTGACATTTATGGGTTTGGTGTAATTCTTTTGGAGTTATTAACAGGGAAGCTTGTGGAGAATAGTGGGTTTGATTTGGCTAAGTGGGTGCACTCGGTGGTTAAAGAAGAGTGGACCGGCGAAGTGTTTGATAAGTCACTGGTTCGTGATGGAACCAGTGAAGAGAGTATGGTGAGTTTGTTGCAGGTTGCACTTAAGTGCATTAATCAGTCACCGGAGGCTAGACCGAGTATCGGTGAAGTCGCTGCAATGATAAATTCTATCAGGAAAGAAGAAGAGAGATCAACAACAAGCTCTCAACTTCCTAGTCTTGATGAAACTGTTTGA

Network for GWHGAAZE017895

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	98	156	2.20E-06
PF00069.26	Pkinase	309	563	8.20E-21

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.090
	SRR3591706	second leaf	4.016
	SRR3591707	mature leaf	4.462
	SRR3591708	Shoot apex	9.977
	SRR3591709	Stem	8.870
	SRR3591710	White floral bud	6.083
	SRR3591711	White flower	6.722
	SRR3591712	Green floral bud	6.000
	SRR3591713	Yellow flower	2.911
SRP173429	SRR8316895	Juvenile bud stage	5.184
	SRR8316896	Juvenile bud stage	6.363
	SRR8316897	Juvenile bud stage	4.304
	SRR8316894	Third green stage	2.831
	SRR8316900	Third green stage	5.575
	SRR8316901	Third green stage	5.447
	SRR8316898	Complete white stage	1.995
	SRR8316899	Complete white stage	4.098
	SRR8316903	Complete white stage	2.622
	SRR8316902	Silver flowering stage	2.465
	SRR8316904	Silver flowering stage	3.222
	SRR8316905	Silver flowering stage	1.973
	SRR8316906	Gold flowering stage	7.454
	SRR8316907	Gold flowering stage	6.803
	SRR8316908	Gold flowering stage	7.784
SRP132670	SRR6706286	Control	8.186
	SRR6706287	Light intensity 50%	7.806
	SRR6706288	Light intensity 20%	8.024
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.716
	CNS0095593	Slightly white alabastrum(diploid) 2	4.450
	CNS0095594	Slightly white alabastrum(diploid) 3	5.964
	CNS0095595	Whole white alabastrum(diploid) 2	3.653
	CNS0095596	Whole white alabastrum(diploid) 3	2.129
	CNS0095597	Whole white alabastrum(diploid) 4	3.823
	CNS0095598	Silvery flower (diploied) 1	4.480
	CNS0095599	Silvery flower (diploied) 2	5.747
	CNS0095600	Silvery flower (diploied) 3	8.443
	CNS0095601	Golden flower (diploid) 1	6.721
	CNS0095602	Golden flower (diploid) 2	10.697
	CNS0095603	Golden flower (diploid) 3	8.681
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.125
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.598
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.769
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.256
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.018
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.424
	CNS0095610	Silvery flower (tetraploid) 1	4.113
	CNS0095611	Silvery flower (tetraploid) 2	5.176
	CNS0095612	Silvery flower (tetraploid) 3	6.737
	CNS0095613	Golden flower (tetraploid) 1	3.098
	CNS0095614	Golden flower (tetraploid) 2	6.015
	CNS0095615	Golden flower (tetraploid) 3	12.231
CRA001975	CRR073297	Stem 1	3.965
	CRR073298	Stem 2	4.883
	CRR073299	Stem 3	2.033
	CRR073300	Leaf 1	3.781
	CRR073301	Leaf 2	4.077
	CRR073302	Leaf 3	1.705
	CRR073303	Juvenile bud 1	1.033
	CRR073304	Juvenile bud 2	2.582
	CRR073305	Juvenile bud 3	1.154
	CRR073306	Third green 1	1.994
	CRR073307	Third green 2	0.796
	CRR073308	Third green 3	1.418
	CRR073309	Second white 1	3.391
	CRR073310	Second white 2	2.787
	CRR073311	Second white 3	4.168
	CRR073312	Silver flowering 1	4.366
	CRR073313	Silver flowering 2	3.678
	CRR073314	Silver flowering 3	4.510
	CRR073315	Gold flowering 1	1.540
	CRR073316	Gold flowering 2	2.456
	CRR073317	Gold flowering 3	1.292
	CRR073318	Tawny withering 1	2.764
	CRR073319	Tawny withering 2	3.022
	CRR073320	Tawny withering 3	3.132