Detail information of GWHGAAZE017894


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008374901.15.33985E-62PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Malus domestica]
Swissprottr|P42749|UBC5_ARATH3E-55Ubiquitin-conjugating enzyme E2 5
trEMBLtr|A0A061FU20|A0A061FU20_THECC8E-61Ubiquitin-conjugating enzyme E2 5 isoform 1 {ECO:0000313|EMBL:EOY20656.1}
TAIR10AT1G63800.14E-43ubiquitin-conjugating enzyme 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1223586012238010+
GWHAAZE00000005mRNA1223586012238010+
GWHAAZE00000005exon1223586012235984+
GWHAAZE00000005exon1223617912236231+
GWHAAZE00000005exon1223647512236603+
GWHAAZE00000005exon1223781712238010+
GWHAAZE00000005CDS1223586012235984+
GWHAAZE00000005CDS1223617912236231+
GWHAAZE00000005CDS1223647512236603+
GWHAAZE00000005CDS1223781712238010+
Transcript Sequence

Network for GWHGAAZE017894

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.27UQ_con41047.00E-29
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K10576UBE2H, UBC8 Ubiquitin mediated proteolysis map04120

Gene Ontology

GO term OntologyName

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE017894.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30510152025303540455055Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.900
SRR3591706second leaf11.215
SRR3591707mature leaf15.141
SRR3591708Shoot apex34.298
SRR3591709Stem50.002
SRR3591710White floral bud22.701
SRR3591711White flower23.212
SRR3591712Green floral bud18.491
SRR3591713Yellow flower12.637
SRP173429 SRR8316895Juvenile bud stage 14.867
SRR8316896Juvenile bud stage 22.447
SRR8316897Juvenile bud stage 17.131
SRR8316894Third green stage 6.739
SRR8316900Third green stage 14.862
SRR8316901Third green stage 12.037
SRR8316898Complete white stage 4.698
SRR8316899Complete white stage 28.727
SRR8316903Complete white stage 8.939
SRR8316902Silver flowering stage4.004
SRR8316904Silver flowering stage6.399
SRR8316905Silver flowering stage2.879
SRR8316906Gold flowering stage 8.372
SRR8316907Gold flowering stage 9.388
SRR8316908Gold flowering stage 10.904
SRP132670SRR6706286Control7.156
SRR6706287Light intensity 50%7.649
SRR6706288Light intensity 20%6.742
CNP0000432CNS0095592Slightly white alabastrum(diploid) 121.171
CNS0095593Slightly white alabastrum(diploid) 219.549
CNS0095594Slightly white alabastrum(diploid) 322.249
CNS0095595Whole white alabastrum(diploid) 215.379
CNS0095596Whole white alabastrum(diploid) 311.546
CNS0095597Whole white alabastrum(diploid) 414.381
CNS0095598Silvery flower (diploied) 127.824
CNS0095599Silvery flower (diploied) 229.889
CNS0095600Silvery flower (diploied) 316.518
CNS0095601Golden flower (diploid) 138.201
CNS0095602Golden flower (diploid) 222.519
CNS0095603Golden flower (diploid) 325.137
CNS0095604Slightly white alabastrum(tetraploid) 121.080
CNS0095605Slightly white alabastrum(tetraploid) 218.264
CNS0095606Slightly white alabastrum(tetraploid) 325.547
CNS0095607Whole white alabastrum(tetraploid) 114.217
CNS0095608Whole white alabastrum(tetraploid) 210.793
CNS0095609Whole white alabastrum(tetraploid) 312.716
CNS0095610Silvery flower (tetraploid) 112.135
CNS0095611Silvery flower (tetraploid) 218.846
CNS0095612Silvery flower (tetraploid) 38.764
CNS0095613Golden flower (tetraploid) 19.149
CNS0095614Golden flower (tetraploid) 215.424
CNS0095615Golden flower (tetraploid) 38.065
CRA001975CRR073297Stem 117.267
CRR073298Stem 213.611
CRR073299Stem 37.563
CRR073300Leaf 18.593
CRR073301Leaf 28.284
CRR073302Leaf 33.792
CRR073303Juvenile bud 14.513
CRR073304Juvenile bud 23.834
CRR073305Juvenile bud 34.841
CRR073306Third green 11.451
CRR073307Third green 21.845
CRR073308Third green 31.505
CRR073309Second white 11.748
CRR073310Second white 21.189
CRR073311Second white 31.070
CRR073312Silver flowering 11.179
CRR073313Silver flowering 22.289
CRR073314Silver flowering 33.456
CRR073315Gold flowering 17.645
CRR073316Gold flowering 23.887
CRR073317Gold flowering 34.446
CRR073318Tawny withering 114.368
CRR073319Tawny withering 217.720
CRR073320Tawny withering 310.441