Gene detail

Detail information of GWHGAAZE017876

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP14925.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SU72\|EDS1C_ARATH	1E-137	Protein EDS1 {ECO:0000305}
trEMBL	tr\|A0A068V2A0\|A0A068V2A0_COFCA	0	Formin-like protein {ECO:0000256\|RuleBase:RU361260}
TAIR10	AT3G48090.1	1E-116	alpha/beta-Hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	12012295	12022932	-
GWHAAZE00000005	mRNA	12012295	12022932	-
GWHAAZE00000005	exon	12012295	12013002	-
GWHAAZE00000005	exon	12013824	12014594	-
GWHAAZE00000005	exon	12017412	12017768	-
GWHAAZE00000005	exon	12019504	12020070	-
GWHAAZE00000005	exon	12020587	12021360	-
GWHAAZE00000005	exon	12022612	12022932	-
GWHAAZE00000005	CDS	12022612	12022932	-
GWHAAZE00000005	CDS	12020587	12021360	-
GWHAAZE00000005	CDS	12019504	12020070	-
GWHAAZE00000005	CDS	12017412	12017768	-
GWHAAZE00000005	CDS	12013824	12014594	-
GWHAAZE00000005	CDS	12012295	12013002	-

Transcript Sequence
>GWHTAAZE017896 ATGGGAGAAAGGCTAGGAGATAGATTAGGGGTGAGCGAAGAGGTGATGATTAAAGCTTGTTCTATGTCCATGGAAGCTTACACCTCTTCTAAAAAGAAGCCTTATGTTTACCACAAGGTTAAGGGCTCGCCGGAGGTGGCACTATTTGCCTTTGATGGATTGCGGACTGTGGAGGATTGGAAGCCTTTTGAAAATACAAAGATCGATCGGATCCTGTTTCCGTCGATCAGGAGTATAGGTACTGATGATGTTGCAATGGTGAATAAAGCATTTGTTCTTAGATTTAAAGCTATTCTCGATAGGCCCAAGTTTGTGGATAAGGTTGAAAAAGCAATGAAGGAAAACCAAATAGTGTTTGCAGGCCACTCCTCAGGAGGCGGAGTTGCAACCCTCATAACCCTCTGGTTCTTTGAGAAATACATAAGAACCGGAATCTACCATAAACCTCCGCATTGCATCACCTTTGGGTCCCCACTAATTGGCGATAGGATTATTTCACATGCTCTCAGGCGAGAGAACTGGGCTGACAATTTCGTACACTTCGTCACAAGGTACGATATTGTACCTCGTATAATGCTAAGTCCTCTCTCCACCATCGAGGAAATGCTCAAATTTATCCTATCTTTCAAGAAAGAACTTATTCATGAGGAATCCAACGAAGCTTCAGAGCTCTTCAAGACTGTCATGAAGAATGCATTATATGTTGCAAGCCATTCTGCTTGTAAAATAATGGGAGGAGGCACAGATCCGCTATCGGAAAATGTCTTGGCATTCGTTCCGCTTAGCCCTTACCGACCTTTTGGCACCTATATTTTCTCAACCGGAAATGGAAAACTGGCTGTAGTGAAGAACCCTGATGCGGTTCTCCAAATGTTGTTCTATTGTGCTCAACCAACCAGTGAAGAAAAATGTGCACAAGTTGCTTGTAGCAGCTTAAATGAACATATGCACTATGAAAGTGAACTCAAAAGCAGCATCTCGCAAATGCAGGATGTAGTTTACTTGGATCACCCAGAAGAGGTTCCATTGTCTTCGAATGGCAGTGCGTCTCATGATGCTAGAGGGACTAACACTGTACTAACTGATTTCGGCCTGAGTGCACATGCCCGGATATGTCTTCGAGCAGCTGGAGAGTTTGAGAAGCGAAAAGTAGAAAACGAAGACAAGATTGATTCTGAAAAAGAAAGCATTCGAGAAGGACTGGTCAAGATCGAAAAGTACAAAAGCCGGTGCAATGTGACATACTACGACAGTTTCAAGCGTCAAGAGTACGAAGAAGACTTCAACATTAACATTTTAAGGCTCAATTTAGCAGGGATATGGGACGAGCTAATAGAAATGCTTAAAAGATCCGAACTTCCCGACAGATTCGAGGGCCGGAAAGAGTGGATAGAGCTTGGAACCGACTATCGAAGGCTCGTGGAGCCTTTAGATATTGGCAACTACTATAGGCACCAGAAGTACAAAGAAACTGGTTCTTACATGGGTAAGGAAAACTGGCCTAGACCGAAACGTTATAGATTCACTCAGAGATGGAGGGAGCATGATCTGAAATTGGCGGTTGATAGCAGCTCGGAGTCGTGTTTTTTGGCACACGTGGAGCAACTAATTGTAAGAGCTGGTAAAGAGTCATTTGAAGCAATGAAGGAGGATATTTTGAAGAGGCAGAGAGAGTTGATAACAATAATAATCAAGATGGGAGAAAGGCTAGGAGAGAGATTAAAGATTAGAGAAGAGGTGATAATTAAAGCTTGTTCTATGTCCATGGAAGCTCACAAATCTGTGAAAGGGAAGCAATATGTTAATGAGAAGGTTAAGGGCTCGCCGGAGGTGGTGGTGGTTTTTGCGTTTGGTGGATTGCCAACTGTGGAGGACTGGAAGCCTTTTGGGGAAACAAAGATCGATCGGAGTATGTTTCCGTCCATCAGGAGTATAGGCACCGATGATGTTGCTATGGTGAATAAAGCATTTCTTCTTAGATTTGAAGCTATGCTCAAGCAATCCAAGTTTGTGGAAGAGGTGCAAAGAGCAATGAAGGAGAAAAACCAAATAGTATTTGCAGGCCACTCCTCAGGAGGTGGAGTTGCCATCCTCATAACCCTCTGGTTCTTAGAGAAATACACAAGAACTGGAAACTACCCAAAACCTCCCCATTGCATCACCTTCGGGTCCCCACTGGTTGGGGATAGGATCATTTCACACGCTCTCAGGCGAGAGAACTGGGCTCATTATTTCATACACTTTGTTACAAGGTACGATATTGTACCTCGAATAATGCTAACCCCCCTCTCGTCAATCGAGAAAAAACTCGAATTTATTCTCCCTTTCAAGAAAAAACCCCTACAGATATCCGAAGAATCTTCAGATCTCTTCAAGACAGTCATGAAGAATGCATCATATGTTGCAAACCATTCGGCTTGTAATCTAATGGGATGCACTAACCCGCTATTGGAAAATGTCTTGGCATTCGTTCCACTTAGCCCTTACCGACCTTTCGGCACCTATATTTTCTCCACCGGAAATGGAAGACTAGCTGTTCTTACGAATCCAGATGCAGTTCTGCAGATGTTATTCTATTGTGCTCAGCTAAGCAGTGAAGAAGAATGTGCGGAAGTTGCTTGTAGAAGCTTAAATGAACATATGACCTATGAAAGTGAACTGAAAAGCAGCATTGAAGAAATGCAGGATGTTGTTTACTTGGATCGCCCAGAATATCTTCCATTGTCTTCTAACGGCAATGCGTCTCTTGATGTTGCAGGGACTAACACTATACTGACTGATTTCGGCCTGAGTGCACATGCCCGGGTATGTCTTCGCGCAGCAGGAGAGTTTGAGAAGCAAAAACAAGAAAACCAAAAAAAGATGGATTCTAAGAAAGATACCATTCGACAAGTACTGGCCAGGATTGAAGAGTACAAAAGATGGTGGGAAACCCGAGGAGTAACACATTACGACGCTTTCAAGCTTCAAAAGGAGAGGAGAGACTTTGAGGCTAACGTTGCAAGGCTCGAGCTAGCAGGTATATGGGATGAACTAATTGAAATGCTAAAAAGGTACGAACTTCCCGATGGATTTGAGGGCATGGAAGGGTGGATAAAGCTTGGGACCGAGTTTCGAAGACTTGTGGAGCCTTTAGATATTGCCAACTACTATAGGCACTTGAAGAACGAAGACACAGGTCCTTACTTAGGTAGGCCTAGGCCGAAACGTTATAGATTCACTCAGAGATGGAGGGAGCACGCTCTACAGATGCCAGTTGATAGCAGCTGGGAGTCGTGTTTTTTGGCAAAGGTGGAGGAACTAAGAACTAGTAAAGAGTCATTTGAAAAGCTTAAGGAGGATATTTTGAAGGTAGAGAAAAAAGTAATTGAATGGGTTAGTAGGGGGGAGCTAGGCAACGGTGTGTTCTTGCAGGGGTCTACGTTTAGTGAGTGGTGGAAAAAATTACCCGAACACCATAGACTGGTATCTGGCCTCAAAGATCACATGAACAATTAA

Network for GWHGAAZE017876

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01764.26	Lipase_3	102	192	8.60E-16
PF18117.2	EDS1_EP	403	556	4.80E-37
PF01764.26	Lipase_3	643	760	2.80E-17
PF18117.2	EDS1_EP	967	1158	3.70E-52

Protein Sequence

>GWHPAAZE017886
MGERLGDRLGVSEEVMIKACSMSMEAYTSSKKKPYVYHKVKGSPEVALFAFDGLRTVEDWKPFENTKIDRILFPSIRSIGTDDVAMVNKAFVLRFKAILDRPKFVDKVEKAMKENQIVFAGHSSGGGVATLITLWFFEKYIRTGIYHKPPHCITFGSPLIGDRIISHALRRENWADNFVHFVTRYDIVPRIMLSPLSTIEEMLKFILSFKKELIHEESNEASELFKTVMKNALYVASHSACKIMGGGTDPLSENVLAFVPLSPYRPFGTYIFSTGNGKLAVVKNPDAVLQMLFYCAQPTSEEKCAQVACSSLNEHMHYESELKSSISQMQDVVYLDHPEEVPLSSNGSASHDARGTNTVLTDFGLSAHARICLRAAGEFEKRKVENEDKIDSEKESIREGLVKIEKYKSRCNVTYYDSFKRQEYEEDFNINILRLNLAGIWDELIEMLKRSELPDRFEGRKEWIELGTDYRRLVEPLDIGNYYRHQKYKETGSYMGKENWPRPKRYRFTQRWREHDLKLAVDSSSESCFLAHVEQLIVRAGKESFEAMKEDILKRQRELITIIIKMGERLGERLKIREEVIIKACSMSMEAHKSVKGKQYVNEKVKGSPEVVVVFAFGGLPTVEDWKPFGETKIDRSMFPSIRSIGTDDVAMVNKAFLLRFEAMLKQSKFVEEVQRAMKEKNQIVFAGHSSGGGVAILITLWFLEKYTRTGNYPKPPHCITFGSPLVGDRIISHALRRENWAHYFIHFVTRYDIVPRIMLTPLSSIEKKLEFILPFKKKPLQISEESSDLFKTVMKNASYVANHSACNLMGCTNPLLENVLAFVPLSPYRPFGTYIFSTGNGRLAVLTNPDAVLQMLFYCAQLSSEEECAEVACRSLNEHMTYESELKSSIEEMQDVVYLDRPEYLPLSSNGNASLDVAGTNTILTDFGLSAHARVCLRAAGEFEKQKQENQKKMDSKKDTIRQVLARIEEYKRWWETRGVTHYDAFKLQKERRDFEANVARLELAGIWDELIEMLKRYELPDGFEGMEGWIKLGTEFRRLVEPLDIANYYRHLKNEDTGPYLGRPRPKRYRFTQRWREHALQMPVDSSWESCFLAKVEELRTSKESFEKLKEDILKVEKKVIEWVSRGELGNGVFLQGSTFSEWWKKLPEHHRLVSGLKDHMNN

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18875	EDS1	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	89.256
	SRR3591706	second leaf	33.501
	SRR3591707	mature leaf	34.231
	SRR3591708	Shoot apex	31.279
	SRR3591709	Stem	100.431
	SRR3591710	White floral bud	49.797
	SRR3591711	White flower	54.515
	SRR3591712	Green floral bud	34.030
	SRR3591713	Yellow flower	25.650
SRP173429	SRR8316895	Juvenile bud stage	38.962
	SRR8316896	Juvenile bud stage	47.248
	SRR8316897	Juvenile bud stage	27.448
	SRR8316894	Third green stage	15.496
	SRR8316900	Third green stage	31.609
	SRR8316901	Third green stage	40.041
	SRR8316898	Complete white stage	20.788
	SRR8316899	Complete white stage	95.205
	SRR8316903	Complete white stage	29.447
	SRR8316902	Silver flowering stage	24.239
	SRR8316904	Silver flowering stage	32.699
	SRR8316905	Silver flowering stage	20.152
	SRR8316906	Gold flowering stage	63.556
	SRR8316907	Gold flowering stage	50.982
	SRR8316908	Gold flowering stage	64.658
SRP132670	SRR6706286	Control	55.174
	SRR6706287	Light intensity 50%	55.167
	SRR6706288	Light intensity 20%	49.156
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	48.699
	CNS0095593	Slightly white alabastrum(diploid) 2	48.999
	CNS0095594	Slightly white alabastrum(diploid) 3	53.560
	CNS0095595	Whole white alabastrum(diploid) 2	35.680
	CNS0095596	Whole white alabastrum(diploid) 3	17.011
	CNS0095597	Whole white alabastrum(diploid) 4	31.906
	CNS0095598	Silvery flower (diploied) 1	86.572
	CNS0095599	Silvery flower (diploied) 2	58.749
	CNS0095600	Silvery flower (diploied) 3	62.607
	CNS0095601	Golden flower (diploid) 1	81.388
	CNS0095602	Golden flower (diploid) 2	77.820
	CNS0095603	Golden flower (diploid) 3	75.290
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.884
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.667
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.417
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.199
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.967
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.498
	CNS0095610	Silvery flower (tetraploid) 1	39.188
	CNS0095611	Silvery flower (tetraploid) 2	33.611
	CNS0095612	Silvery flower (tetraploid) 3	36.804
	CNS0095613	Golden flower (tetraploid) 1	28.410
	CNS0095614	Golden flower (tetraploid) 2	38.371
	CNS0095615	Golden flower (tetraploid) 3	36.347
CRA001975	CRR073297	Stem 1	46.096
	CRR073298	Stem 2	41.079
	CRR073299	Stem 3	40.942
	CRR073300	Leaf 1	46.644
	CRR073301	Leaf 2	55.452
	CRR073302	Leaf 3	47.669
	CRR073303	Juvenile bud 1	43.263
	CRR073304	Juvenile bud 2	42.157
	CRR073305	Juvenile bud 3	71.158
	CRR073306	Third green 1	41.438
	CRR073307	Third green 2	36.810
	CRR073308	Third green 3	43.209
	CRR073309	Second white 1	36.446
	CRR073310	Second white 2	30.313
	CRR073311	Second white 3	30.388
	CRR073312	Silver flowering 1	29.744
	CRR073313	Silver flowering 2	29.873
	CRR073314	Silver flowering 3	25.070
	CRR073315	Gold flowering 1	57.054
	CRR073316	Gold flowering 2	86.124
	CRR073317	Gold flowering 3	72.475
	CRR073318	Tawny withering 1	94.470
	CRR073319	Tawny withering 2	114.684
	CRR073320	Tawny withering 3	105.204