Gene detail

Detail information of GWHGAAZE017871

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010255646.1	6.44612E-95	PREDICTED: transcription factor MYB1R1-like [Nelumbo nucifera]
Swissprot	tr\|Q2V9B0\|MY1R1_SOLTU	6E-78	Transcription factor MYB1R1
trEMBL	tr\|D3Y3F5\|D3Y3F5_9ROSI	2E-93	MYB transcription factor 1 {ECO:0000313\|EMBL:ADC94862.1}
TAIR10	AT1G70000.2	5E-44	myb-like transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	11907379	11909031	-
GWHAAZE00000005	mRNA	11907379	11909031	-
GWHAAZE00000005	exon	11907379	11907801	-
GWHAAZE00000005	exon	11908071	11908279	-
GWHAAZE00000005	exon	11908731	11909031	-
GWHAAZE00000005	CDS	11908731	11909031	-
GWHAAZE00000005	CDS	11908071	11908279	-
GWHAAZE00000005	CDS	11907379	11907801	-

Transcript Sequence
>GWHTAAZE017891 ATGATTCCCTCCTGCTCGCAGTGTGGTTCTAACGGCCACAACTCACGCACGTGCATATCGGCCGCAGATGACCACGCATCTGAAGTCGCCGCCGGTGAGATCATGCTGTTTGGTGTGCGAGTGAAGGTGGATCCGATGAGGAAGAGCGTGAGTATGAACAATCTGTCACAATATGAACAGCCTCCTCCTCATCATGAATCTTCTAACGCCAATGCCTCTGCCGTTGCCTCCGCTTTCGGTTACGCTTCCGCTGACGACGCCGTTCAAAACCATTCCGCTGCGAGCCGAGAGCGCAAGCGAGGAGTTCCATGGACGGAGGAGGAACACAAACTGTTCCTCTTAGGATTGCAGAAAGTAGGTAAAGGAGACTGGAGAGGAATCTCAAGAAATTTCGTGAAGACACGAACTCCTACACAAGTTGCAAGCCATGCTCAGAAATACTTCCTCCGGCGAAACAACCTCAATCGCCGTCGCCGGAGATCCAGCCTCTTTGACATTACTACAGATTCGGTTCCTGTAATTCCAATGGAAGAAGAACTCATTAATCAAGACACCACAACTCCGCTTGTTTCAACACTGGTTCAGCCGGAAGTATCCAACATCAGTGTATTTCCGGTGTCACATTTTCCAGTGACAGTTAGTCCTGTTCCATTACAGGCTCCGGCTGAGATTCCATTGGATAACCTAACCCTTGGATGTGGTGATCAAGTTGATAATGAATCAAAACTCCTAATCCGCCCAATTCCAGTTCTTCCAGTTTCTTATTCACCAACAAGGACTGATCCTAATTTAAACCAGAAATCAGCAGTTGACCCCTCAACATTGTCTCTCAAGCTGTCACTTTCCTCCAATCACAATCAGCCATCAAGGCAGTCTGCATTTCTTGTGATGCCAAGCTTCAACAATGGAGACAGCAGCATCAGTGTTGCATGA

Network for GWHGAAZE017871

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	103	147	2.70E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding
GO:0003676	molecular_function	nucleic acid binding
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	98.708
	SRR3591706	second leaf	54.179
	SRR3591707	mature leaf	100.470
	SRR3591708	Shoot apex	41.832
	SRR3591709	Stem	108.273
	SRR3591710	White floral bud	141.344
	SRR3591711	White flower	63.031
	SRR3591712	Green floral bud	126.563
	SRR3591713	Yellow flower	17.361
SRP173429	SRR8316895	Juvenile bud stage	29.842
	SRR8316896	Juvenile bud stage	34.733
	SRR8316897	Juvenile bud stage	17.806
	SRR8316894	Third green stage	22.178
	SRR8316900	Third green stage	63.286
	SRR8316901	Third green stage	48.550
	SRR8316898	Complete white stage	23.997
	SRR8316899	Complete white stage	139.250
	SRR8316903	Complete white stage	48.797
	SRR8316902	Silver flowering stage	12.184
	SRR8316904	Silver flowering stage	12.173
	SRR8316905	Silver flowering stage	5.504
	SRR8316906	Gold flowering stage	15.586
	SRR8316907	Gold flowering stage	19.739
	SRR8316908	Gold flowering stage	19.052
SRP132670	SRR6706286	Control	84.454
	SRR6706287	Light intensity 50%	68.374
	SRR6706288	Light intensity 20%	65.719
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	57.370
	CNS0095593	Slightly white alabastrum(diploid) 2	59.104
	CNS0095594	Slightly white alabastrum(diploid) 3	43.067
	CNS0095595	Whole white alabastrum(diploid) 2	67.125
	CNS0095596	Whole white alabastrum(diploid) 3	65.718
	CNS0095597	Whole white alabastrum(diploid) 4	68.751
	CNS0095598	Silvery flower (diploied) 1	73.791
	CNS0095599	Silvery flower (diploied) 2	47.243
	CNS0095600	Silvery flower (diploied) 3	29.944
	CNS0095601	Golden flower (diploid) 1	60.501
	CNS0095602	Golden flower (diploid) 2	47.994
	CNS0095603	Golden flower (diploid) 3	43.015
	CNS0095604	Slightly white alabastrum(tetraploid) 1	61.207
	CNS0095605	Slightly white alabastrum(tetraploid) 2	60.135
	CNS0095606	Slightly white alabastrum(tetraploid) 3	63.334
	CNS0095607	Whole white alabastrum(tetraploid) 1	86.134
	CNS0095608	Whole white alabastrum(tetraploid) 2	82.185
	CNS0095609	Whole white alabastrum(tetraploid) 3	69.106
	CNS0095610	Silvery flower (tetraploid) 1	36.076
	CNS0095611	Silvery flower (tetraploid) 2	42.827
	CNS0095612	Silvery flower (tetraploid) 3	32.538
	CNS0095613	Golden flower (tetraploid) 1	10.535
	CNS0095614	Golden flower (tetraploid) 2	31.768
	CNS0095615	Golden flower (tetraploid) 3	11.648
CRA001975	CRR073297	Stem 1	89.713
	CRR073298	Stem 2	94.486
	CRR073299	Stem 3	125.776
	CRR073300	Leaf 1	133.754
	CRR073301	Leaf 2	133.911
	CRR073302	Leaf 3	123.768
	CRR073303	Juvenile bud 1	170.474
	CRR073304	Juvenile bud 2	114.226
	CRR073305	Juvenile bud 3	237.084
	CRR073306	Third green 1	37.695
	CRR073307	Third green 2	42.713
	CRR073308	Third green 3	45.312
	CRR073309	Second white 1	13.428
	CRR073310	Second white 2	11.512
	CRR073311	Second white 3	9.886
	CRR073312	Silver flowering 1	13.730
	CRR073313	Silver flowering 2	12.127
	CRR073314	Silver flowering 3	13.985
	CRR073315	Gold flowering 1	29.447
	CRR073316	Gold flowering 2	40.642
	CRR073317	Gold flowering 3	39.450
	CRR073318	Tawny withering 1	134.576
	CRR073319	Tawny withering 2	86.856
	CRR073320	Tawny withering 3	107.430