Gene detail

Detail information of GWHGAAZE017858

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002266656.1	PREDICTED: uncharacterized protein LOC100256959 isoform X1 [Vitis vinifera]
trEMBL	tr\|F6GTB6\|F6GTB6_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43125.1}
TAIR10	AT3G47890.1	Ubiquitin carboxyl-terminal hydrolase-related protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	11774049	11785358	+
GWHAAZE00000005	mRNA	11774049	11785358	+
GWHAAZE00000005	exon	11774049	11776664	+
GWHAAZE00000005	exon	11776749	11776877	+
GWHAAZE00000005	exon	11776967	11777146	+
GWHAAZE00000005	exon	11777241	11777290	+
GWHAAZE00000005	exon	11777384	11777705	+
GWHAAZE00000005	exon	11777859	11777946	+
GWHAAZE00000005	exon	11778057	11778233	+
GWHAAZE00000005	exon	11779564	11779674	+
GWHAAZE00000005	exon	11782090	11782286	+
GWHAAZE00000005	exon	11782401	11782616	+
GWHAAZE00000005	exon	11784015	11784162	+
GWHAAZE00000005	exon	11784249	11784382	+
GWHAAZE00000005	exon	11784783	11784869	+
GWHAAZE00000005	exon	11784952	11785011	+
GWHAAZE00000005	exon	11785251	11785358	+
GWHAAZE00000005	CDS	11774049	11776664	+
GWHAAZE00000005	CDS	11776749	11776877	+
GWHAAZE00000005	CDS	11776967	11777146	+
GWHAAZE00000005	CDS	11777241	11777290	+
GWHAAZE00000005	CDS	11777384	11777705	+
GWHAAZE00000005	CDS	11777859	11777946	+
GWHAAZE00000005	CDS	11778057	11778233	+
GWHAAZE00000005	CDS	11779564	11779674	+
GWHAAZE00000005	CDS	11782090	11782286	+
GWHAAZE00000005	CDS	11782401	11782616	+
GWHAAZE00000005	CDS	11784015	11784162	+
GWHAAZE00000005	CDS	11784249	11784382	+
GWHAAZE00000005	CDS	11784783	11784869	+
GWHAAZE00000005	CDS	11784952	11785011	+
GWHAAZE00000005	CDS	11785251	11785358	+

Transcript Sequence
>GWHTAAZE017878 ATGGGGCATAAGAAGAAAAATGTCGCACCTCGCTATAAACCATCTTCCGAACCCTCGATAGTTTCCGGCGGAACCCTTGCCGCCGATAGTAGACCTATATCAGTCCATAAGGAACAACGAACCATCGATTTATGTTCGTCAATTCAACAACCACCACCAATAGAAGAAGAGCACCAACAAACGCAGCTAACTAAATTCGAGCCCTCCTTGCTTGTGGAATCGGATGTTTCGTTTTATTCTGCAGTCAAGCTTGAATGTGAGCGGGCACTGACTGCGTTAAGAAGAGGCAACCACACAAAAGCCCTAAGGCTGATGAAGGATATGTGTGCTAAGAATGAGAACTCGGTTCACTCGGCTCTGATTCATAGAGTTCAAGGGACTGTTTGTGTTAAGGTTGCTTCCATTATCGATGATCCCAATGCTAAACAGCGACATTTGAAGAATGCAATCGAGTCTGCTAAGAAGGCGGTTATGTTATCGCCAAATTCGATTGAATTCGCACATTTTTATGCCAATTTGTTGTATGAGGCCGCAAATGATGGGAAGGAGTACGAGGAGGTGGTGCTAGAGTGTGAACGTGCTTTGGGAATTGAGAATCCAGTTGATCCTGCAAAGGAGAGTTTGCAGGATGAGAGCCAGCAGAAGATATCGACAACAGATGCAAGAATTATGCATGTGCAGAACGAGCTCCGTTCGCTAATACAGAAATCTAACATTGCTTCTATTTCGACTTGGATGAAAAATCTTGGGAATGGAGAAGAGAAATTTCGGTTGATTCCTATAAGGAGGGCTTCAGAGGACCCAATGGAGATGAAATTTGGTCAAACGAGGAGGCCCAATGAAATCAAGAAAGCAACGAAGACACCCGAGGAGCGTAGAAAGGAGATTGAAGTTCGCGTGGCTGCTGCGAGGCTGTTGCAACAGAAATCAGAATCACCCCAATCACAGACTGAGGGAGATAAGGCATTAGATTCCTCTTTGGGACCCACTCAGAGAGCAGGTGAGAGACGGAAGATTGGGAACACGAGGAGAAATATATCTTCTGCAGAGAGGAAAAACTGGGTTCAATCGTATTGGACCTCCATGGGTTTGGATAGGAAGAAAGAGTTGCTCAGAATAAAGATTTCTGAACTTAAGGCCCATTTCAGTTTGCCAAAGGATGGCCTTGCATATGATGTCCTCGCAGAAGCTCTATCTTTCTTTAAAGTTAATAAAGGGTGGAAGTTTTGGACTTGCTGCCGTTGCAATGAGAAATTCTCTGACTCTGAGTCGCATATGCAACATGTTGTGCAGGAGCACATGGGAAACTTGTTGCCGAAAATGCAGTCCATCTTGCCTCAAAATGTTGAGAGTGAGTGGACGGAAATGCTTCTCAACTGCTCTTGGAAACCATTGGATGTCAATGCTGCAGTTCAAATGCTTAGAAGACGATCCAATCCCCTTGTTCAGGATTTTGTTGACGAATCATATGCAAAGAGTGATATGGAGGGGGTTAAGGATTGCTTAACCGACAGTTACTGCTCCGGAGATGCATGGGGTTCATCCTTTGGAAAGAACTTGGGGCCTAATTGCAATGGTAGTACTGTGGAGAGCAGAGAATATTTGTTTCCTAATAAATGGCCATTATCTGATGACACTGAGCGTGCAAAGATCCTTAAGAATATCCATTCCATGTTCGAGTTGCTTATCAAACACAAATATCTTGCTGGAAGTCATCTTAGCAAGGTTGTACAATTTGCAGTGGATGAGCTACAGGGTCTTGCCTGTGGTTCTCAGCTTCTTAACTTTGGAGTGGATCAAACACCCGTATGCATATGCTTTTTGGGAGCTCATGAGCTTAAGAAAATACTTAAATTCCTACAGGAGTTATCTCAGACCTGCGGAATAGGTAGATATTCTGAGAAAAGTAATTCTACAGATGATTCACATGGTAGCACTAAAGTTATTGGGATGATAGAGAAGATAGTGCTTGATGAACATGGGTCGTGTTTATTGTTGGATGAGCATTCTCTTCCATGCAAAAGAACTGCCACAGAAGATGCAAATAGAGCAATTTTGGGTAGTGTCAGTTATGAGAATGGAGATCTTGATGTGGATGCTTTATTATCATGGATTTTTACGGGTCCAACAAGTGGGGAACAATTGGCATTGTGGACCCACACAAGAGAAGAGAAATCAAATCAAGGGATGGAAATATTCCAGATGCTCGAGAAGGAATTTTACCACCTACAGAGTTTGTGCGAGAGGAAATGCGAGCATTTAAGTAATGAGGAGGCTTTGCAGGCAGTGGAGGATCTCTGTCTTGAAGAAGGTAAAAAAAGGGAAAGTGTAACAGAATTTGTTCCCCAAAGTTACGAGTCTGTCTTAAGGAAGCGGCGAGAAGAGCTTATGGATAGTGATAACGATATTAATAGATTTGAGTCGGAGACGATATCGATTATTCTAAAAGAAGCAGAATCTTTGAATGCCAAGCAGTTTGGATTTGAGGAAACTTCTCATTTGCCTGACTTGGAGTCAGGTGAAGATGACGATTGGAGAACAAAGGACTACCTGTATCAAGTGGACTCTTGCATAGAAGTTGCAATCCAGAGACGGAAAGAACATTTGTCTATTGAGCTCAGCAAAATTGATGCGAGGATCATGCAAAATGTTACCAGCATGCAGCAGTTGGAAGTCAAGCTTGATCCTGCTTCCGCCCATGATTATCAATCCATAGTGGTTCCTCTTGTAAAGTCATTTATGCGGGCACGCCTAGAGGATCTAGCAGAGAAAGATGCAACAAAGAAATCTGATGCGGCCAGAGAAGCATTTTTAGCAGAACTTGCACTAGATTCTAAAAAGGGCACTGGTGGAGGAAGTGATAATTCTAGACAGACAAAGGAAAAGAAAAGGAACAAGGAGTACAGAAAAACCAGGGACTTAAAGGGTACTGTTAATAACGAGCTGCATATAAACCCAGAGAGTGCTGAAATGAACTCCTTTACAGTTGCATGTGATGAAGACCATCTAGATTCTGAAACTGTAGATGGCCGCAGTGGTGATGCCTTAAATGAGCAGGAAGAAGAATTTAGACGAAGAAAAATTGAGCTTGAAGCTGAGGAAAGAAAGCTTGAAGAAACTTTGGAGTATCAAAGACGAATCGAGAATGAGGCTAAACAGAAGCATCTTGCAGAGCAGCATAAAAAGACTTCAATAGCACTTCCAGAGACATTCGTAGCCGTTGGAAACCCCGATGCATACTTGAAGCACAGTGATGATGATCGAGATATACATGGCCAATTGAAACATTGTCGGCAGGAATCCTTGACGCCGAATAATGGATTTCCAAGCAACTTCGACAGTATGCCTGGAAACACAGGAGATGGAGGAGCTTCAAAAAGAAATGGCTTTCCTAATGGAGGAATTCCACATGATGACGTTTTACCTTCTGATCGACGGACAGGAAGGAAAGGTAAACGGCAGAAAAATCCCACTAAATTAACTGATGGAAAATCTCAACCGGTGTCTTCTGACAAGGACAAAACTGAAGTCGGACAAGTTAAACTCAAGGACAGTCTCCACGATAATCACATGGGAGATAATGGAGCGAAGACATTGAGACAATTACATTCAGAGGAGGATGATGAGGAAAGGTTCCAAGCTGATCTCAAAAAAGCCGTGCGACAAAGCCTGGACACATTCCATTCACATAAGAAATTGCCGCCGATATCAAGTTTGATGATGCCGCAAGAGATGTTTGAGAAAGGGGACGAGTTCGTGGTATCATCCAACGAAGCCATAATTGAAAATGTGAATGAAGTTGATGTATATGGCACTGGGCTGAAGAACGAAATCGGAGAATACAATTGTTTTCTTAATGTTATCATACAGTCCTTGTGGAATCTAAGACAGTTTCGAGATGAATTCTTGAGGAGATCAACATTAGAGCATGTTCATGTTGGTGAGCCCTGTGTTATTTGTGCCTTATACGGCATTTTTTCAGCTCTGAGCATGGCATCTACGGATCTTCGAAGAGAATCCATTTCCCCTACTTCTCTTAGGATTGCTCTCAGCAACCTGTATCCCGAGAGTAATTTCTTTCAGGAGGTTATGTGTCCAGAAAGCTCCTTCGATGAGCTGCTAAACCTTGTGGAGATGAATCACCAGTTAGCATGTGATCCAGAGGCTAGTGGTTGTGGGAAGCTTAATTATATCCATCACATCCTTTCAAGTCCACCGCATGTTTTTATAACAGTTCTGGGTTGGCAGAATACTTGTGAGAGTGTCGATGACATAAAAGCCACGCTGGCGACCCTAGCTCCAGAGATAGATGTTGGTGTCCTTTATCGTGGCCTTGATCCAAAGAACAGACATTGCCTGGCTTCTGTGGTTTGCTACTATGGGCAACATTATCATTGCTTTACCTACAGTCACGAGCATGCACGGTGGGTTATGTATGATGACAAAACTGTCAAGGTCATTGGTGGTTGGGGTGACGTTCTTACCATATGCGAAAGAGGCCATTTGCAACCTCAGGACGTACGTGTTCTCGAGAGAAGTTTTGTTTTATCGTTTCCGAGAACAGAGGAATCAAATGGGTTGCAGTTACTGTGTATCAGCCGAATTGGCTTCTGGCATCAGTGA

Network for GWHGAAZE017858

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04781.13	DUF627	88	198	4.20E-32
PF04780.13	DUF629	355	860	4.30E-153
PF00443.30	UCH	1272	1357	2.20E-05

Protein Sequence

>GWHPAAZE017868
MGHKKKNVAPRYKPSSEPSIVSGGTLAADSRPISVHKEQRTIDLCSSIQQPPPIEEEHQQTQLTKFEPSLLVESDVSFYSAVKLECERALTALRRGNHTKALRLMKDMCAKNENSVHSALIHRVQGTVCVKVASIIDDPNAKQRHLKNAIESAKKAVMLSPNSIEFAHFYANLLYEAANDGKEYEEVVLECERALGIENPVDPAKESLQDESQQKISTTDARIMHVQNELRSLIQKSNIASISTWMKNLGNGEEKFRLIPIRRASEDPMEMKFGQTRRPNEIKKATKTPEERRKEIEVRVAAARLLQQKSESPQSQTEGDKALDSSLGPTQRAGERRKIGNTRRNISSAERKNWVQSYWTSMGLDRKKELLRIKISELKAHFSLPKDGLAYDVLAEALSFFKVNKGWKFWTCCRCNEKFSDSESHMQHVVQEHMGNLLPKMQSILPQNVESEWTEMLLNCSWKPLDVNAAVQMLRRRSNPLVQDFVDESYAKSDMEGVKDCLTDSYCSGDAWGSSFGKNLGPNCNGSTVESREYLFPNKWPLSDDTERAKILKNIHSMFELLIKHKYLAGSHLSKVVQFAVDELQGLACGSQLLNFGVDQTPVCICFLGAHELKKILKFLQELSQTCGIGRYSEKSNSTDDSHGSTKVIGMIEKIVLDEHGSCLLLDEHSLPCKRTATEDANRAILGSVSYENGDLDVDALLSWIFTGPTSGEQLALWTHTREEKSNQGMEIFQMLEKEFYHLQSLCERKCEHLSNEEALQAVEDLCLEEGKKRESVTEFVPQSYESVLRKRREELMDSDNDINRFESETISIILKEAESLNAKQFGFEETSHLPDLESGEDDDWRTKDYLYQVDSCIEVAIQRRKEHLSIELSKIDARIMQNVTSMQQLEVKLDPASAHDYQSIVVPLVKSFMRARLEDLAEKDATKKSDAAREAFLAELALDSKKGTGGGSDNSRQTKEKKRNKEYRKTRDLKGTVNNELHINPESAEMNSFTVACDEDHLDSETVDGRSGDALNEQEEEFRRRKIELEAEERKLEETLEYQRRIENEAKQKHLAEQHKKTSIALPETFVAVGNPDAYLKHSDDDRDIHGQLKHCRQESLTPNNGFPSNFDSMPGNTGDGGASKRNGFPNGGIPHDDVLPSDRRTGRKGKRQKNPTKLTDGKSQPVSSDKDKTEVGQVKLKDSLHDNHMGDNGAKTLRQLHSEEDDEERFQADLKKAVRQSLDTFHSHKKLPPISSLMMPQEMFEKGDEFVVSSNEAIIENVNEVDVYGTGLKNEIGEYNCFLNVIIQSLWNLRQFRDEFLRRSTLEHVHVGEPCVICALYGIFSALSMASTDLRRESISPTSLRIALSNLYPESNFFQEVMCPESSFDELLNLVEMNHQLACDPEASGCGKLNYIHHILSSPPHVFITVLGWQNTCESVDDIKATLATLAPEIDVGVLYRGLDPKNRHCLASVVCYYGQHYHCFTYSHEHARWVMYDDKTVKVIGGWGDVLTICERGHLQPQDVRVLERSFVLSFPRTEESNGLQLLCISRIGFWHQ

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.500
	SRR3591706	second leaf	11.483
	SRR3591707	mature leaf	11.985
	SRR3591708	Shoot apex	11.803
	SRR3591709	Stem	15.200
	SRR3591710	White floral bud	16.433
	SRR3591711	White flower	16.955
	SRR3591712	Green floral bud	18.900
	SRR3591713	Yellow flower	11.860
SRP173429	SRR8316895	Juvenile bud stage	9.801
	SRR8316896	Juvenile bud stage	11.602
	SRR8316897	Juvenile bud stage	6.777
	SRR8316894	Third green stage	6.572
	SRR8316900	Third green stage	16.782
	SRR8316901	Third green stage	14.348
	SRR8316898	Complete white stage	4.133
	SRR8316899	Complete white stage	13.567
	SRR8316903	Complete white stage	12.272
	SRR8316902	Silver flowering stage	5.738
	SRR8316904	Silver flowering stage	11.538
	SRR8316905	Silver flowering stage	4.656
	SRR8316906	Gold flowering stage	12.812
	SRR8316907	Gold flowering stage	11.263
	SRR8316908	Gold flowering stage	12.230
SRP132670	SRR6706286	Control	14.598
	SRR6706287	Light intensity 50%	15.578
	SRR6706288	Light intensity 20%	16.423
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.840
	CNS0095593	Slightly white alabastrum(diploid) 2	5.013
	CNS0095594	Slightly white alabastrum(diploid) 3	5.942
	CNS0095595	Whole white alabastrum(diploid) 2	6.361
	CNS0095596	Whole white alabastrum(diploid) 3	5.774
	CNS0095597	Whole white alabastrum(diploid) 4	5.683
	CNS0095598	Silvery flower (diploied) 1	8.605
	CNS0095599	Silvery flower (diploied) 2	7.190
	CNS0095600	Silvery flower (diploied) 3	17.855
	CNS0095601	Golden flower (diploid) 1	6.388
	CNS0095602	Golden flower (diploid) 2	15.622
	CNS0095603	Golden flower (diploid) 3	14.386
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.408
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.485
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.447
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.225
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.060
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.818
	CNS0095610	Silvery flower (tetraploid) 1	15.619
	CNS0095611	Silvery flower (tetraploid) 2	16.776
	CNS0095612	Silvery flower (tetraploid) 3	14.624
	CNS0095613	Golden flower (tetraploid) 1	4.856
	CNS0095614	Golden flower (tetraploid) 2	10.958
	CNS0095615	Golden flower (tetraploid) 3	9.836
CRA001975	CRR073297	Stem 1	15.443
	CRR073298	Stem 2	14.951
	CRR073299	Stem 3	10.553
	CRR073300	Leaf 1	16.173
	CRR073301	Leaf 2	13.035
	CRR073302	Leaf 3	9.954
	CRR073303	Juvenile bud 1	11.377
	CRR073304	Juvenile bud 2	7.246
	CRR073305	Juvenile bud 3	13.745
	CRR073306	Third green 1	5.677
	CRR073307	Third green 2	4.925
	CRR073308	Third green 3	6.370
	CRR073309	Second white 1	3.965
	CRR073310	Second white 2	5.830
	CRR073311	Second white 3	8.032
	CRR073312	Silver flowering 1	5.335
	CRR073313	Silver flowering 2	4.921
	CRR073314	Silver flowering 3	5.026
	CRR073315	Gold flowering 1	3.948
	CRR073316	Gold flowering 2	7.160
	CRR073317	Gold flowering 3	2.375
	CRR073318	Tawny withering 1	7.878
	CRR073319	Tawny withering 2	6.104
	CRR073320	Tawny withering 3	6.147