Gene detail

Detail information of GWHGAAZE017849

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007037205.1	Leucine-rich repeat protein kinase family protein isoform 1 [Theobroma cacao]
Swissprot	tr\|C0LGF4\|FEI1_ARATH	LRR receptor-like serine/threonine-protein kinase FEI 1 (Precursor)
trEMBL	tr\|A0A061FWT8\|A0A061FWT8_THECC	Leucine-rich repeat protein kinase family protein isoform 1 {ECO:0000313\|EMBL:EOY21706.1}
TAIR10	AT5G62710.1	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	11619970	11623759	-
GWHAAZE00000005	mRNA	11619970	11623759	-
GWHAAZE00000005	exon	11623675	11623759	-
GWHAAZE00000005	exon	11623408	11623543	-
GWHAAZE00000005	exon	11623231	11623302	-
GWHAAZE00000005	exon	11623064	11623135	-
GWHAAZE00000005	exon	11622897	11622968	-
GWHAAZE00000005	exon	11622676	11622747	-
GWHAAZE00000005	exon	11622469	11622540	-
GWHAAZE00000005	exon	11621983	11622074	-
GWHAAZE00000005	exon	11621659	11621832	-
GWHAAZE00000005	exon	11621251	11621583	-
GWHAAZE00000005	exon	11620842	11621096	-
GWHAAZE00000005	exon	11620609	11620742	-
GWHAAZE00000005	exon	11619970	11620500	-
GWHAAZE00000005	CDS	11623675	11623759	-
GWHAAZE00000005	CDS	11623408	11623543	-
GWHAAZE00000005	CDS	11623231	11623302	-
GWHAAZE00000005	CDS	11623064	11623135	-
GWHAAZE00000005	CDS	11622897	11622968	-
GWHAAZE00000005	CDS	11622676	11622747	-
GWHAAZE00000005	CDS	11622469	11622540	-
GWHAAZE00000005	CDS	11621983	11622074	-
GWHAAZE00000005	CDS	11621659	11621832	-
GWHAAZE00000005	CDS	11621251	11621583	-
GWHAAZE00000005	CDS	11620842	11621096	-
GWHAAZE00000005	CDS	11620609	11620742	-
GWHAAZE00000005	CDS	11620276	11620500	-
GWHAAZE00000005	three_prime_UTR	11619970	11620275	-

Transcript Sequence
>GWHTAAZE017869 ATGGATGCACTCATTTGGCTTGTTTTTTCTGCAATTTTGTTAGCAACCCTCTTGCCCACTTGCTCCTTTGCTCTCTCTCAAGATGGTATCGCATTGTTGGAATTCAAAAGTTCTTTGAATGACAGTAAGAACTCTCTCAGCAACTGGGTAGATTCTGATGAATCTCCCTGCAAATGGACTGGTATCTCCTGCTATCCCCATGACCAGAAAGTTCAATCTATAAACTTGCCCTATATGCAGCTTGGAGGGTTCATATCCCCAAGCATTGGTAAACTCGACAGACTGCAAAGACTGGCACTTCACCAGAACAGCTTACATGGACTTATTCCTCATGAAATTACTAATTGTTCCGAACTCAGAGCTGTGTACCTGAGGGGTAATTTTCTCCAAGGTGGTATACCATCAAATATTGGCAATCTTTCTTTACTCAACATACTTGACTTATCAAGCAATTCACTTAAGGGAGCAATACCTTCCTCTCTTGGCCGTCTCACACGTCTTCGGTATTTGAATTTATCTACAAACTTCTTTTCGGGTGAAATTCCAGATGTCGGAATCCTAAGCACTTTTGGAAACAGCTCCTTTATTGGTAATTTAGATCTTTGCGGCCAACAAATACGTAAGCCTTGTCGAACCTCACTGGGATTCCCTGCAGTGTTGCCTCATGCTGAGATGCCTACGAAAAGATCCTCTCATTATGTTAAAGGCGCTGTTATTGGTGCTATGTCCACATTGGGCATTGCCCTCATTGTGCTCTTCATTTTCCTCTGGGTTTGGTTGGTGTCAAAAAAGGAAAGAGCTGTCAAGAGATACACCGAAGTCAAAAAACAAGTCCATCAAGAAACAGGCACCAAGCTTATCACTTTCCATGGTGATCTTCCCTACCCTTCATCCGAGATAATCGAAAAACTCGAATCCCTTGACGAGGAAGATGTTGTAGGGTCCGGTGGATTTGGTACAGTTTATCGGATGGTTATGAATGATTGTGGCACGTTTGCTGTTAAGAGAATCGATCGAGGCCGTGAAGGCTCCGATCAAGTATTTGAGAGGGAGCTAGAAATCTTGGGTAGCGTCAAACACATAAATCTAGTCAATCTTCGAGGTTACTGCAGGGTCCCTTCTGCAAAGCTTCTAATCTATGATTACTTGGCCATGGGCAGCTTAGATGACTTCTTGCATGAACATACCGAAGAAGATCATTCTTTAAACTGGAATGCTCGTTTAAGAATAGCCCTTGGTTCAGCCCGGGGTTTGGCATACTTGCACCATGACTGCTGCCCAAGAATAGTTCATCGAGATATAAAATCCGGCAACATACTACTGGATGAAAACCTAGAGCCTCGTGTTTCGGACTTTGGCCTTTCCAAACTTTTAGTTGACGAAGATGCTCATGTTACAACCGTAGTTGCTGGTACTTTTGGCTATCTCGCTCCAGAGTATCTGCAAAGTGGAAGAGCCACAGAGAAGTCGGATGTGTATAGCTTTGGAGTTCTCTTGTTAGAGCTTGTAGCCGGAAAGAGGCCAACTGATCCATCTTTTGTAAAGCGGGGCTTGAATGTCGTTGGCTGGATGAACACCCTAGTCAGGGAGAATCGGCTGGAAGAGATTTTAGATAAGAGGTGCACTGATGCAGATGTAGAAACAGTAGAAGCAATAATAGAATTAGCGGCGAGGTGCACAAATTCAAACCCAGATGAGAGGCCAACGATGCAACAGGTATTGCAGTTGTTAGAGCAAGAGGTGATGTCGCCTTGCCCAAGCGATTTCTACGATTCCCATTCAGATTATGCTTGAAATCGTGTCCAAATTTTGCGCGTTTGGAGTGTGGTAGGTGGTGTTTTGATCTTCACTTTGTATTGCCCAGTGGTGGTGGTGGTGTTGTGCTTCGTGTATATAATTATTATTATCTGGAATGGTGGTGGGGGATGTGGATTTTTGTCTTGTACCTTTTTTTGGGGGGAGAATTTTCTTGCTTTTACCATAAGCTTAGTGAGCAAGCAATGTGGAGGCCCCCGATTGTTATCCAATCTCCATGGCACATGAGAATCTATTGCATTTATTGTTATGTACTTTTTGCGAGTAATCTTGATTGATGTTCAT

Network for GWHGAAZE017849

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	26	64	3.50E-13
PF13855.7	LRR_8	118	175	1.10E-07
PF00069.26	Pkinase	309	575	1.90E-48

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XIIIa

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	72.609
	SRR3591706	second leaf	10.081
	SRR3591707	mature leaf	2.360
	SRR3591708	Shoot apex	64.182
	SRR3591709	Stem	27.897
	SRR3591710	White floral bud	6.637
	SRR3591711	White flower	4.110
	SRR3591712	Green floral bud	11.377
	SRR3591713	Yellow flower	0.290
SRP173429	SRR8316895	Juvenile bud stage	7.322
	SRR8316896	Juvenile bud stage	6.512
	SRR8316897	Juvenile bud stage	2.763
	SRR8316894	Third green stage	2.700
	SRR8316900	Third green stage	5.721
	SRR8316901	Third green stage	3.680
	SRR8316898	Complete white stage	0.041
	SRR8316899	Complete white stage	4.212
	SRR8316903	Complete white stage	0.610
	SRR8316902	Silver flowering stage	0.249
	SRR8316904	Silver flowering stage	0.529
	SRR8316905	Silver flowering stage	0.072
	SRR8316906	Gold flowering stage	0.350
	SRR8316907	Gold flowering stage	0.400
	SRR8316908	Gold flowering stage	0.358
SRP132670	SRR6706286	Control	3.034
	SRR6706287	Light intensity 50%	2.667
	SRR6706288	Light intensity 20%	3.262
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.757
	CNS0095593	Slightly white alabastrum(diploid) 2	9.340
	CNS0095594	Slightly white alabastrum(diploid) 3	5.901
	CNS0095595	Whole white alabastrum(diploid) 2	4.458
	CNS0095596	Whole white alabastrum(diploid) 3	3.910
	CNS0095597	Whole white alabastrum(diploid) 4	2.941
	CNS0095598	Silvery flower (diploied) 1	4.614
	CNS0095599	Silvery flower (diploied) 2	5.498
	CNS0095600	Silvery flower (diploied) 3	1.454
	CNS0095601	Golden flower (diploid) 1	5.508
	CNS0095602	Golden flower (diploid) 2	2.291
	CNS0095603	Golden flower (diploid) 3	2.567
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.516
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.766
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.994
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.811
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.183
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.584
	CNS0095610	Silvery flower (tetraploid) 1	2.536
	CNS0095611	Silvery flower (tetraploid) 2	3.847
	CNS0095612	Silvery flower (tetraploid) 3	1.336
	CNS0095613	Golden flower (tetraploid) 1	0.848
	CNS0095614	Golden flower (tetraploid) 2	1.156
	CNS0095615	Golden flower (tetraploid) 3	0.292
CRA001975	CRR073297	Stem 1	12.446
	CRR073298	Stem 2	10.946
	CRR073299	Stem 3	13.196
	CRR073300	Leaf 1	4.969
	CRR073301	Leaf 2	4.336
	CRR073302	Leaf 3	5.236
	CRR073303	Juvenile bud 1	2.944
	CRR073304	Juvenile bud 2	0.455
	CRR073305	Juvenile bud 3	4.101
	CRR073306	Third green 1	0.035
	CRR073307	Third green 2	0.147
	CRR073308	Third green 3	0.233
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.734
	CRR073316	Gold flowering 2	0.663
	CRR073317	Gold flowering 3	0.884
	CRR073318	Tawny withering 1	15.764
	CRR073319	Tawny withering 2	10.933
	CRR073320	Tawny withering 3	23.915