Detail information of GWHGAAZE017843


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010242364.11.88679E-74PREDICTED: mitochondrial outer membrane protein porin of 36 kDa [Nelumbo nucifera]
Swissprottr|P42056|VDAC2_SOLTU2E-75Mitochondrial outer membrane protein porin of 36 kDa
trEMBLtr|A0A068TY63|A0A068TY63_COFCA1E-74Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313|EMBL:CDP00288.1}
TAIR10AT3G01280.11E-57voltage dependent anion channel 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1156003611560780+
GWHAAZE00000005mRNA1156003611560780+
GWHAAZE00000005exon1156003611560119+
GWHAAZE00000005exon1156019011560398+
GWHAAZE00000005exon1156047411560780+
GWHAAZE00000005CDS1156003611560119+
GWHAAZE00000005CDS1156019011560398+
GWHAAZE00000005CDS1156047411560780+
Transcript Sequence

Network for GWHGAAZE017843

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0278GO:0055085 transmembrane transport GOslim:biological_process
GO:0006816 calcium ion transport GOslim:biological_process
GO:0015369 calcium:proton antiporter activity GOslim:molecular_function
GO:0006811 ion transport GOslim:biological_process
GO:0005741 mitochondrial outer membrane GOslim:cellular_component
GO:0005216 ion channel activity GOslim:molecular_function
GO:0008324 cation transmembrane transporter activity GOslim:molecular_function
GO:0006812 cation transport GOslim:biological_process
GO:0016021 integral component of membrane GOslim:cellular_component


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01459.23Porin_381921.00E-38
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K15040VDAC2 Calcium signaling pathway map04020
cGMP-PKG signaling pathwaymap04022
Ferroptosismap04216
Necroptosismap04217
Cellular senescencemap04218
NOD-like receptor signaling pathwaymap04621
Cholesterol metabolismmap04979

Gene Ontology

GO term OntologyName
GO:0055085biological_processtransmembrane transport
GO:0005741cellular_componentmitochondrial outer membrane

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.773
SRR3591706second leaf9.809
SRR3591707mature leaf4.332
SRR3591708Shoot apex1.942
SRR3591709Stem12.245
SRR3591710White floral bud2.317
SRR3591711White flower2.350
SRR3591712Green floral bud1.329
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 1.646
SRR8316896Juvenile bud stage 0.704
SRR8316897Juvenile bud stage 0.642
SRR8316894Third green stage 1.071
SRR8316900Third green stage 0.902
SRR8316901Third green stage 0.725
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.975
SRR8316903Complete white stage 0.862
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control1.002
SRR6706287Light intensity 50%1.413
SRR6706288Light intensity 20%1.093
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.100
CNS0095593Slightly white alabastrum(diploid) 20.685
CNS0095594Slightly white alabastrum(diploid) 32.263
CNS0095595Whole white alabastrum(diploid) 21.842
CNS0095596Whole white alabastrum(diploid) 30.768
CNS0095597Whole white alabastrum(diploid) 41.578
CNS0095598Silvery flower (diploied) 112.101
CNS0095599Silvery flower (diploied) 25.576
CNS0095600Silvery flower (diploied) 30.782
CNS0095601Golden flower (diploid) 11.598
CNS0095602Golden flower (diploid) 21.325
CNS0095603Golden flower (diploid) 31.654
CNS0095604Slightly white alabastrum(tetraploid) 16.317
CNS0095605Slightly white alabastrum(tetraploid) 21.968
CNS0095606Slightly white alabastrum(tetraploid) 313.335
CNS0095607Whole white alabastrum(tetraploid) 17.667
CNS0095608Whole white alabastrum(tetraploid) 20.857
CNS0095609Whole white alabastrum(tetraploid) 30.911
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 21.069
CNS0095612Silvery flower (tetraploid) 30.394
CNS0095613Golden flower (tetraploid) 10.082
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.146
CRA001975CRR073297Stem 11.119
CRR073298Stem 20.544
CRR073299Stem 30.283
CRR073300Leaf 10.899
CRR073301Leaf 20.192
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.003
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.064
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.068
CRR073311Second white 30.000
CRR073312Silver flowering 10.159
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 14.905
CRR073316Gold flowering 23.805
CRR073317Gold flowering 33.804
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.128
CRR073320Tawny withering 30.278