Gene detail

Detail information of GWHGAAZE017837

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002267867.3	8.0225E-180	PREDICTED: probable WRKY transcription factor 72 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9LXG8\|WRK72_ARATH	2E-90	Probable WRKY transcription factor 72
trEMBL	tr\|D7SIE7\|D7SIE7_VITVI	3E-180	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15258.3}
TAIR10	AT1G18860.1	1E-61	WRKY DNA-binding protein 61

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	11443506	11445788	-
GWHAAZE00000005	mRNA	11443506	11445788	-
GWHAAZE00000005	exon	11443506	11444417	-
GWHAAZE00000005	exon	11444845	11444958	-
GWHAAZE00000005	exon	11445050	11445595	-
GWHAAZE00000005	exon	11445768	11445788	-
GWHAAZE00000005	CDS	11445768	11445788	-
GWHAAZE00000005	CDS	11445050	11445595	-
GWHAAZE00000005	CDS	11444845	11444958	-
GWHAAZE00000005	CDS	11443506	11444417	-

Transcript Sequence
>GWHTAAZE017857 ATGTTATTGTGGACTTGTCATGATGATGAGCTTGAATTGGCGAAAGCCGAAATGGGCGAGGTTAGAGAAGAAAACAAAAGGCTAAGGCTATACTTGGAACAAATGATGAAGGACTACCAAACCCTTCAAAAGCAATTCAATGACACCGTTCAACAAGAACCCAAGAACCCCACAAATCATGCAGATCAAGAAATGGAAGAGTCCGACCTCATATCCCTTAGCCTCGGACGAACTTCAAGCACTGACCTAAACAAAGACATCGAAAAGTTTAAAAACGTGAGCAAAAATGAAGTAAATGATGAGCAAGATAAAGAAGGGTTAGTGCTCGGACTAGACTGCAAATTCGAAGTGTCAAAAATTAAAAGAGCCGAATCTTATCAAAGCCCAGAAAATAGCTTAGAAGAAGTGAAGGAAGATGCCGGGCAGACTTGGCCACCACCACCTCATAATAATAATAATAATAATAATGGTTTGAAGACAACGAGAAATGGCGATGACGAAGTTTCACAACAGAATCCAGCCAAGAAAGCCAGGGTTTCTGTTAGGGTTCGATGTGATACGCCTACGATGAATGATGGATGCCAATGGAGGAAATATGGACAGAAGATTGCAAAAGGAAATCCTTGCCCCAGAGCTTATTATCGTTGCACTGTTGCTCCTTCCTGTCCAGTTAGAAAACAGGTTCAAAGATGCGCCGAAGACATGTCCATACTGATCACAACCTATGAAGGAACCCACAACCACTCACTTCCAGTCTCAGCCACAGCCATGGCCTCCACCACCTCTGCTGCTGCTAGCATGCTAATGTCTGGCTCCTCCACCTCCGGAACAACCCTCAACCCGCAGTCAGCCACAACCTTTACTGAGCTTCACGGCCTGAATTTTAACCTCTCATCAGACAACTCAAAATCGAAGCCATTTTACCCCCCAAATTCCTCAATCTCATCATCATCACCTTCATGCCCAACAATCACGCTCGACCTCACCTCAACCCCATCCTCCTCATCACATTTCAATAGAATCTCTTCAAATTTCCCTCCTAGATACTCCACCACAAATCTCAACTTCAGCTCCTTAGACCAATCCAACACATTACCCATGAACTGGGCCAATGGGGCCCTTAGCTATGGGTCCCAATCCCATCCTTACAACAAGTACCAAATGGGGCCGCTAAATTTTGCAAGAACCCAACAAGAAAACGTTTATCAATCCTACATGCAAAAGACAATTTTACCCCCCACTCAGCAATCTCTACCACCGGATACTATCGAAGCTGCGACAAAAGCCATCACGGCAGACCCGAGTTTCCAATCTGCTTTAGCCGCAGCTTTGACTTCAATAATCGGCTCCGGTAGTGGGGCCGGGGAGAAATTTGGTCAGAATTTGAAGTTGAGTGAGCAATTTCCAGTACTTTCTAGCTTCCCATCAACTTCGAATTCAAATAATTGTACGTCAAGTTACTTGAATAAGTCGCAGCCGCCATCGGCTAATTCTCAATCGAGGGGCTTGATGTTTTTGCCACCTTCTTTGCCATTATCCAACTCGAAGAGCAAGTCTACTTCACCAGAAGATAATCGAGATCGTGTTGTTTGA

Network for GWHGAAZE017837

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	191	248	6.10E-24

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.073
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.152
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.215
	SRR3591710	White floral bud	4.645
	SRR3591711	White flower	0.666
	SRR3591712	Green floral bud	15.059
	SRR3591713	Yellow flower	2.712
SRP173429	SRR8316895	Juvenile bud stage	0.214
	SRR8316896	Juvenile bud stage	0.766
	SRR8316897	Juvenile bud stage	1.514
	SRR8316894	Third green stage	0.947
	SRR8316900	Third green stage	7.251
	SRR8316901	Third green stage	5.949
	SRR8316898	Complete white stage	4.456
	SRR8316899	Complete white stage	13.422
	SRR8316903	Complete white stage	7.370
	SRR8316902	Silver flowering stage	3.284
	SRR8316904	Silver flowering stage	4.212
	SRR8316905	Silver flowering stage	1.652
	SRR8316906	Gold flowering stage	7.126
	SRR8316907	Gold flowering stage	7.420
	SRR8316908	Gold flowering stage	15.652
SRP132670	SRR6706286	Control	8.286
	SRR6706287	Light intensity 50%	8.805
	SRR6706288	Light intensity 20%	9.785
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.396
	CNS0095593	Slightly white alabastrum(diploid) 2	0.799
	CNS0095594	Slightly white alabastrum(diploid) 3	0.665
	CNS0095595	Whole white alabastrum(diploid) 2	2.111
	CNS0095596	Whole white alabastrum(diploid) 3	1.956
	CNS0095597	Whole white alabastrum(diploid) 4	3.277
	CNS0095598	Silvery flower (diploied) 1	1.852
	CNS0095599	Silvery flower (diploied) 2	0.292
	CNS0095600	Silvery flower (diploied) 3	5.044
	CNS0095601	Golden flower (diploid) 1	0.729
	CNS0095602	Golden flower (diploid) 2	2.329
	CNS0095603	Golden flower (diploid) 3	2.608
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.620
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.270
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.492
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.549
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.232
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.138
	CNS0095610	Silvery flower (tetraploid) 1	4.134
	CNS0095611	Silvery flower (tetraploid) 2	2.475
	CNS0095612	Silvery flower (tetraploid) 3	3.888
	CNS0095613	Golden flower (tetraploid) 1	8.252
	CNS0095614	Golden flower (tetraploid) 2	3.958
	CNS0095615	Golden flower (tetraploid) 3	2.173
CRA001975	CRR073297	Stem 1	3.964
	CRR073298	Stem 2	2.890
	CRR073299	Stem 3	1.348
	CRR073300	Leaf 1	9.562
	CRR073301	Leaf 2	9.773
	CRR073302	Leaf 3	8.012
	CRR073303	Juvenile bud 1	16.434
	CRR073304	Juvenile bud 2	11.511
	CRR073305	Juvenile bud 3	10.715
	CRR073306	Third green 1	3.250
	CRR073307	Third green 2	2.345
	CRR073308	Third green 3	3.686
	CRR073309	Second white 1	1.637
	CRR073310	Second white 2	2.043
	CRR073311	Second white 3	2.620
	CRR073312	Silver flowering 1	5.949
	CRR073313	Silver flowering 2	2.285
	CRR073314	Silver flowering 3	4.125
	CRR073315	Gold flowering 1	0.966
	CRR073316	Gold flowering 2	0.849
	CRR073317	Gold flowering 3	1.333
	CRR073318	Tawny withering 1	4.175
	CRR073319	Tawny withering 2	4.533
	CRR073320	Tawny withering 3	0.709