Gene detail

Detail information of GWHGAAZE017830

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010268227.1	2.8314E-136	PREDICTED: protein kinase 2B, chloroplastic-like [Nelumbo nucifera]
Swissprot	tr\|O49840\|APK2B_ARATH	6E-130	Protein kinase 2B, chloroplastic (Precursor)
trEMBL	tr\|D7TNC2\|D7TNC2_VITVI	2E-135	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI31995.3}
TAIR10	AT2G02800.2	2E-106	protein kinase 2B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	11345415	11348045	+
GWHAAZE00000005	mRNA	11345415	11348045	+
GWHAAZE00000005	exon	11345415	11345709	+
GWHAAZE00000005	exon	11346321	11346457	+
GWHAAZE00000005	exon	11346567	11346690	+
GWHAAZE00000005	exon	11347480	11348045	+
GWHAAZE00000005	CDS	11345415	11345709	+
GWHAAZE00000005	CDS	11346321	11346457	+
GWHAAZE00000005	CDS	11346567	11346690	+
GWHAAZE00000005	CDS	11347480	11348045	+

Transcript Sequence
>GWHTAAZE017850 GGTCCCAGCCAAGATTCCCATCCTCTGCCTACACCTCCTCTGCCTATCCTAACATATCCTGGAAAGGAGGGAGCTGTAAGTCCAAGGTCCGAGACCGAAATATTGTCCTCTCCATATTTAAAATCGTTCTCGTTCAACGTGCTTAAGTGTGCCACTAGAAATTTCAATCCTGAGTTTCTTATTGGAGAAGGCGGCTTCGGTTATGTTTACAAAGGCTGGCTTGACAAAGATAACCTTTCTGCTTCACGACCTGGAGATGGATTGGTAGTTGCAGTTAAGAAGCTTAAACCCGAAGGGGGCGCACAACCTCTCTCTTGGGCGTTAAGAATGAAAGTTGCTGTAGGTGCTGCTCGAGGGCTCTCTTTTCTGCATGGTTCAGAATCACAAGTTATATACCGTGATTTTAAAGCTTCTAATATCCTCTTAGATTCGGAATTTAATGCCAAGCTTTCAGACTTTGGCTTGGCAAAAGCTGGTCCAACTGGCGATCTGACTCACGTATCTACAGAAGTCATGGGTACTCAGGGCTATGCTGCCCCTGAATATCTTGCTACAGGTCGGCTAACCGCAAAGTGCGATGTATATAGCTTTGGGGTTGTGTTGTTGGAGGTGCTAACTGGTCGGCGAGCTGTAGACAAAAGACGGGTGGGACCCGAGCAGAAACTGTTGGATTGGGTAACACCCCAGTTGAAAAACAAGCGAAAGTTATGCAGAATAATGGACACTAAGTTGGAGGGGCAGTACCCCCAGAAAGGAGCTTACGTTGCCGCCCATCTTGCGCTACAATGTGTGCACGACGAGCCCAGATACCGGCCCCACATGGCCGATGTCTTAGCTATTCTAGAAAAACTCCCCTCTCCCAAATCTAGTAGTGCCAAAAATGACAAGCCCTCTTCTGTAGAGAGCCAATCTTTATTATCCGAGCCTCAGCCCCAGGCTTCCCCTATGAATATGACCCCACGAGGGACTAGTTTGCCGGCCCCAATAAAAATGTCGACGTGTAATCCACTAGTAGTAAAGTCTTTGCCACCACCTCCTATAAAATCACCCAAGGCAGTAGTGTCTTCTTTGCCGACGCATATGATTAAGAACTCCCTCCCGCAATCTCCGCACGGACGGTAA

Network for GWHGAAZE017830

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	112	278	9.20E-26

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.251
	SRR3591706	second leaf	0.055
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.555
	SRR3591710	White floral bud	79.752
	SRR3591711	White flower	2.286
	SRR3591712	Green floral bud	69.275
	SRR3591713	Yellow flower	1.784
SRP173429	SRR8316895	Juvenile bud stage	5.629
	SRR8316896	Juvenile bud stage	17.620
	SRR8316897	Juvenile bud stage	9.377
	SRR8316894	Third green stage	7.551
	SRR8316900	Third green stage	40.693
	SRR8316901	Third green stage	39.873
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.307
	SRR8316903	Complete white stage	0.078
	SRR8316902	Silver flowering stage	0.418
	SRR8316904	Silver flowering stage	2.152
	SRR8316905	Silver flowering stage	0.566
	SRR8316906	Gold flowering stage	0.063
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.205
SRP132670	SRR6706286	Control	19.087
	SRR6706287	Light intensity 50%	19.200
	SRR6706288	Light intensity 20%	16.328
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	45.538
	CNS0095593	Slightly white alabastrum(diploid) 2	32.377
	CNS0095594	Slightly white alabastrum(diploid) 3	49.894
	CNS0095595	Whole white alabastrum(diploid) 2	95.169
	CNS0095596	Whole white alabastrum(diploid) 3	107.147
	CNS0095597	Whole white alabastrum(diploid) 4	120.237
	CNS0095598	Silvery flower (diploied) 1	3.168
	CNS0095599	Silvery flower (diploied) 2	10.094
	CNS0095600	Silvery flower (diploied) 3	2.570
	CNS0095601	Golden flower (diploid) 1	4.305
	CNS0095602	Golden flower (diploid) 2	1.772
	CNS0095603	Golden flower (diploid) 3	2.019
	CNS0095604	Slightly white alabastrum(tetraploid) 1	73.048
	CNS0095605	Slightly white alabastrum(tetraploid) 2	84.604
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.085
	CNS0095607	Whole white alabastrum(tetraploid) 1	136.423
	CNS0095608	Whole white alabastrum(tetraploid) 2	158.055
	CNS0095609	Whole white alabastrum(tetraploid) 3	66.784
	CNS0095610	Silvery flower (tetraploid) 1	1.554
	CNS0095611	Silvery flower (tetraploid) 2	7.541
	CNS0095612	Silvery flower (tetraploid) 3	21.469
	CNS0095613	Golden flower (tetraploid) 1	2.019
	CNS0095614	Golden flower (tetraploid) 2	0.317
	CNS0095615	Golden flower (tetraploid) 3	8.627
CRA001975	CRR073297	Stem 1	10.908
	CRR073298	Stem 2	11.246
	CRR073299	Stem 3	5.833
	CRR073300	Leaf 1	42.989
	CRR073301	Leaf 2	30.716
	CRR073302	Leaf 3	11.350
	CRR073303	Juvenile bud 1	34.445
	CRR073304	Juvenile bud 2	22.066
	CRR073305	Juvenile bud 3	3.702
	CRR073306	Third green 1	14.520
	CRR073307	Third green 2	19.068
	CRR073308	Third green 3	17.228
	CRR073309	Second white 1	0.784
	CRR073310	Second white 2	2.772
	CRR073311	Second white 3	2.499
	CRR073312	Silver flowering 1	19.369
	CRR073313	Silver flowering 2	14.605
	CRR073314	Silver flowering 3	6.150
	CRR073315	Gold flowering 1	12.095
	CRR073316	Gold flowering 2	3.058
	CRR073317	Gold flowering 3	3.783
	CRR073318	Tawny withering 1	16.238
	CRR073319	Tawny withering 2	16.887
	CRR073320	Tawny withering 3	15.991