Detail information of GWHGAAZE017810


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002284909.10PREDICTED: malate dehydrogenase, chloroplastic [Vitis vinifera]
Swissprottr|Q9SN86|MDHP_ARATH0Malate dehydrogenase, chloroplastic (Precursor)
trEMBLtr|F6GT74|F6GT74_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB43083.1}
TAIR10AT3G47520.13E-164malate dehydrogenase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1105603211057228+
GWHAAZE00000005mRNA1105603211057228+
GWHAAZE00000005exon1105603211057228+
GWHAAZE00000005CDS1105603211057228+
Transcript Sequence

Network for GWHGAAZE017810

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00056.24Ldh_1_N812235.00E-48
PF02866.19Ldh_1_C2253901.30E-49
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00026MDH2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Citrate cyclemap00020
Pyruvate metabolismmap00620
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation in photosynthetic organismsmap00710
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0055114biological_processoxidation-reduction process
GO:0006108biological_processmalate metabolic process
GO:0006099biological_processtricarboxylic acid cycle
GO:0003824molecular_functioncatalytic activity
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0016615molecular_functionmalate dehydrogenase activity
GO:0030060molecular_functionL-malate dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE017810.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3020406080100120140160180200Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf98.067
SRR3591706second leaf74.339
SRR3591707mature leaf44.104
SRR3591708Shoot apex71.550
SRR3591709Stem52.052
SRR3591710White floral bud95.034
SRR3591711White flower125.786
SRR3591712Green floral bud152.024
SRR3591713Yellow flower101.523
SRP173429 SRR8316895Juvenile bud stage 53.034
SRR8316896Juvenile bud stage 53.929
SRR8316897Juvenile bud stage 37.471
SRR8316894Third green stage 30.054
SRR8316900Third green stage 142.939
SRR8316901Third green stage 116.800
SRR8316898Complete white stage 49.590
SRR8316899Complete white stage 116.450
SRR8316903Complete white stage 61.607
SRR8316902Silver flowering stage64.963
SRR8316904Silver flowering stage70.421
SRR8316905Silver flowering stage35.136
SRR8316906Gold flowering stage 107.092
SRR8316907Gold flowering stage 123.781
SRR8316908Gold flowering stage 144.036
SRP132670SRR6706286Control124.531
SRR6706287Light intensity 50%131.732
SRR6706288Light intensity 20%151.417
CNP0000432CNS0095592Slightly white alabastrum(diploid) 173.440
CNS0095593Slightly white alabastrum(diploid) 284.800
CNS0095594Slightly white alabastrum(diploid) 352.318
CNS0095595Whole white alabastrum(diploid) 282.112
CNS0095596Whole white alabastrum(diploid) 393.654
CNS0095597Whole white alabastrum(diploid) 459.013
CNS0095598Silvery flower (diploied) 158.291
CNS0095599Silvery flower (diploied) 257.422
CNS0095600Silvery flower (diploied) 3105.464
CNS0095601Golden flower (diploid) 142.403
CNS0095602Golden flower (diploid) 287.425
CNS0095603Golden flower (diploid) 387.639
CNS0095604Slightly white alabastrum(tetraploid) 180.817
CNS0095605Slightly white alabastrum(tetraploid) 275.206
CNS0095606Slightly white alabastrum(tetraploid) 3127.425
CNS0095607Whole white alabastrum(tetraploid) 154.522
CNS0095608Whole white alabastrum(tetraploid) 262.434
CNS0095609Whole white alabastrum(tetraploid) 3116.533
CNS0095610Silvery flower (tetraploid) 193.995
CNS0095611Silvery flower (tetraploid) 284.697
CNS0095612Silvery flower (tetraploid) 370.193
CNS0095613Golden flower (tetraploid) 163.440
CNS0095614Golden flower (tetraploid) 298.362
CNS0095615Golden flower (tetraploid) 379.330
CRA001975CRR073297Stem 1102.547
CRR073298Stem 297.644
CRR073299Stem 3119.844
CRR073300Leaf 1108.683
CRR073301Leaf 2120.001
CRR073302Leaf 3169.288
CRR073303Juvenile bud 1188.332
CRR073304Juvenile bud 2161.626
CRR073305Juvenile bud 3168.909
CRR073306Third green 1102.367
CRR073307Third green 295.405
CRR073308Third green 393.089
CRR073309Second white 1146.916
CRR073310Second white 293.967
CRR073311Second white 376.480
CRR073312Silver flowering 1116.082
CRR073313Silver flowering 2133.555
CRR073314Silver flowering 3125.916
CRR073315Gold flowering 158.430
CRR073316Gold flowering 288.620
CRR073317Gold flowering 384.182
CRR073318Tawny withering 1107.634
CRR073319Tawny withering 287.066
CRR073320Tawny withering 3105.950