Gene detail

Detail information of GWHGAAZE017788

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP31283.1	0	hypothetical protein JCGZ_11659 [Jatropha curcas]
Swissprot	tr\|Q689G9\|PRR1_ORYSJ	5E-109	Two-component response regulator-like PRR1
trEMBL	tr\|A0A067K8G3\|A0A067K8G3_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP31283.1}
TAIR10	AT5G61380.1	2E-90	CCT motif -containing response regulator protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	10806170	10814535	-
GWHAAZE00000005	mRNA	10806170	10814535	-
GWHAAZE00000005	exon	10814352	10814535	-
GWHAAZE00000005	exon	10813766	10813993	-
GWHAAZE00000005	exon	10813520	10813644	-
GWHAAZE00000005	exon	10813047	10813290	-
GWHAAZE00000005	exon	10806970	10807089	-
GWHAAZE00000005	exon	10806170	10806894	-
GWHAAZE00000005	CDS	10814352	10814535	-
GWHAAZE00000005	CDS	10813766	10813993	-
GWHAAZE00000005	CDS	10813520	10813644	-
GWHAAZE00000005	CDS	10813047	10813290	-
GWHAAZE00000005	CDS	10806970	10807089	-
GWHAAZE00000005	CDS	10806170	10806894	-

Transcript Sequence
>GWHTAAZE017808 ATGGAGAGGAATGAGATTGGCTCAAGTAAAGATGGTGGCGGTGGTGATGGTGAAGGTGTAAAAAATTATAGTAAGAGCAGTGATGGGTTTATTGATCGAAGTAGAGTGCGGATTTTGCTCTGCGATAATGATTCCAAGGATTCAGAGGAGGTTTTTACGCTTTTGTGTAAATGTTCATATCAAGTATTTAAATCTAGTATAGCAGTTTGTTATGCTGAATTAATATGGATGGTGGGTGGTTACTTTGCAGTGACCTCTGTGAGATCACCCAGACAGGTGGTTGACGCCCTGAATGCTGAGGGTCCTGATATAGATATCATTCTTTCCGAAGTTGACCTCCCTATGTCCAAAGGTTTGAAGATGTTAAAATATATTATGAGGGATAAAGAGTTGAGACGGATTCCGGTCATTACTCAGGATGAAGTACCTGTCGTTGTCAAGTGCTTGAAACTTGGTGCAGCTGATTATCTGGTGAAGCCCTTAAGAACTAATGAGCTGTTGAACTTATGGACGCACATGTGGAGAAGAAGGCGAATGCTTGGACTAGAAGAGAAGAATATATTGAGCTATGACTTGGATATGGTGGGATCAGATCCTAGTGATGCCAATACAAACAGCACTAACTTGTTCTCAGACGACACAGATGACAAGTCGAGGAAAATTTCTAATCCTGAGGTGTGTGTGTCAACGCATCAGCAAGATGAGGTTAGTTTGATTTTTGGAATGCTACTCAAACTAGGTTATTGGGTTTCTTATTGGTTGTTAAGAAGCATGGATACAGGACATATTCTGTCATGTCCAAAGAAGAATGAACTGAAAATAGGCGAGTGTTCAGCCTTCTTCACATATGTCAAATCAAGCGCTCTCAAGATCGATAGCCAAATGGTTGCCCCTAAACTTGGAAATGAATTTGTGAGCAGCAACATAACCCCTGGTTCTGTGTGTGTGGAGAGATCTTGTACTTCCCCTCAACTGCCAGAATTCTCACAGCAAAGGGACTCAAACATAGAAGAGTTCTCTCAAGTGTATATGCATCCAAGACATGACAGTAACCTTGATGTCTCGGGTTTCAATGCACATACTTCATACCCCTACTATATTTCTGGATTAATGAATCAATATATGATGCCATCAATGTACCAAAATAACCCGCAGGACCTACAAAACCTTGCTACTTTAAATATGTTGCCTCAGTACAATCAATATCAGCATTGCCCTCCTCACGTTCCCCAGATGGCATCATTTCCTTATTACCCCATTAGATTGTGCTTACCACCGGACCAAAACCCTGGCGAGCAGCCATGGCCATCATATGGTGGCAGTTCATCGTCAACTGATGGGAAGTCGAATAAAGTTGATCAAAGAGAGGCAGCCCTGCTTAAGTTCAGGCAGAAGCGGAAAGAACGTTGTTTTGACAAGAAGATTAGGTATGCTAATAGAAAACAGCTTGTGAAGAAGAGGTCTCGGGTGAGGGGACAGTTTGTTGCCAGAAGGATTAATGGTTTAAACGTGGATCTTAATGGGCAACCGACTACTTCTGCTGACTATGATGACGACGATTATTATGACGAAGAGCTAGCAGACAGAGACTCGTCTCCCGAGGACAATGCTTCTGGTTTTCAATAA

Network for GWHGAAZE017788

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00072.25	Response_reg	81	168	2.70E-11
PF06203.15	CCT	455	496	1.30E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Pseudo ARR-B

KEGG pathway

KO	Enzyme	pathway	mapID
K12127	TOC1, APRR1	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0000160	biological_process	phosphorelay signal transduction system
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	50.110
	SRR3591706	second leaf	30.460
	SRR3591707	mature leaf	37.827
	SRR3591708	Shoot apex	42.530
	SRR3591709	Stem	73.482
	SRR3591710	White floral bud	54.722
	SRR3591711	White flower	51.447
	SRR3591712	Green floral bud	48.967
	SRR3591713	Yellow flower	41.598
SRP173429	SRR8316895	Juvenile bud stage	36.690
	SRR8316896	Juvenile bud stage	51.463
	SRR8316897	Juvenile bud stage	25.077
	SRR8316894	Third green stage	24.727
	SRR8316900	Third green stage	61.045
	SRR8316901	Third green stage	62.488
	SRR8316898	Complete white stage	30.318
	SRR8316899	Complete white stage	96.658
	SRR8316903	Complete white stage	54.545
	SRR8316902	Silver flowering stage	30.777
	SRR8316904	Silver flowering stage	47.087
	SRR8316905	Silver flowering stage	20.652
	SRR8316906	Gold flowering stage	56.853
	SRR8316907	Gold flowering stage	59.112
	SRR8316908	Gold flowering stage	65.928
SRP132670	SRR6706286	Control	47.061
	SRR6706287	Light intensity 50%	51.619
	SRR6706288	Light intensity 20%	54.481
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	39.415
	CNS0095593	Slightly white alabastrum(diploid) 2	35.627
	CNS0095594	Slightly white alabastrum(diploid) 3	34.371
	CNS0095595	Whole white alabastrum(diploid) 2	34.338
	CNS0095596	Whole white alabastrum(diploid) 3	31.275
	CNS0095597	Whole white alabastrum(diploid) 4	31.869
	CNS0095598	Silvery flower (diploied) 1	52.931
	CNS0095599	Silvery flower (diploied) 2	40.907
	CNS0095600	Silvery flower (diploied) 3	54.884
	CNS0095601	Golden flower (diploid) 1	42.664
	CNS0095602	Golden flower (diploid) 2	51.468
	CNS0095603	Golden flower (diploid) 3	47.406
	CNS0095604	Slightly white alabastrum(tetraploid) 1	34.956
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.962
	CNS0095606	Slightly white alabastrum(tetraploid) 3	60.213
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.965
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.796
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.545
	CNS0095610	Silvery flower (tetraploid) 1	59.195
	CNS0095611	Silvery flower (tetraploid) 2	44.580
	CNS0095612	Silvery flower (tetraploid) 3	42.995
	CNS0095613	Golden flower (tetraploid) 1	35.646
	CNS0095614	Golden flower (tetraploid) 2	52.089
	CNS0095615	Golden flower (tetraploid) 3	33.156
CRA001975	CRR073297	Stem 1	51.770
	CRR073298	Stem 2	44.655
	CRR073299	Stem 3	14.683
	CRR073300	Leaf 1	60.098
	CRR073301	Leaf 2	56.104
	CRR073302	Leaf 3	22.079
	CRR073303	Juvenile bud 1	28.467
	CRR073304	Juvenile bud 2	20.139
	CRR073305	Juvenile bud 3	33.740
	CRR073306	Third green 1	13.221
	CRR073307	Third green 2	10.644
	CRR073308	Third green 3	13.104
	CRR073309	Second white 1	10.383
	CRR073310	Second white 2	14.057
	CRR073311	Second white 3	10.716
	CRR073312	Silver flowering 1	5.495
	CRR073313	Silver flowering 2	5.730
	CRR073314	Silver flowering 3	4.597
	CRR073315	Gold flowering 1	10.703
	CRR073316	Gold flowering 2	14.922
	CRR073317	Gold flowering 3	7.754
	CRR073318	Tawny withering 1	24.352
	CRR073319	Tawny withering 2	30.488
	CRR073320	Tawny withering 3	23.043