Gene detail

Detail information of GWHGAAZE017784

Functional Annotation

Database	Orthologs	Annotation
Nr	AHE93340.1	sucrose non-fermenting 1 [Camellia sinensis]
Swissprot	tr\|Q38997\|KIN10_ARATH	SNF1-related protein kinase catalytic subunit alpha KIN10
trEMBL	tr\|W0D842\|W0D842_CAMSI	Sucrose non-fermenting 1 {ECO:0000313\|EMBL:AHE93340.1}
TAIR10	AT3G01090.2	SNF1 kinase homolog 10

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	10774597	10780011	+
GWHAAZE00000005	mRNA	10774597	10780011	+
GWHAAZE00000005	exon	10774597	10774898	+
GWHAAZE00000005	exon	10775998	10776191	+
GWHAAZE00000005	exon	10776369	10776553	+
GWHAAZE00000005	exon	10776711	10776893	+
GWHAAZE00000005	exon	10777151	10777282	+
GWHAAZE00000005	exon	10777449	10777634	+
GWHAAZE00000005	exon	10778108	10778197	+
GWHAAZE00000005	exon	10778284	10778367	+
GWHAAZE00000005	exon	10779138	10779263	+
GWHAAZE00000005	exon	10779664	10780011	+
GWHAAZE00000005	five_prime_UTR	10774597	10774898	+
GWHAAZE00000005	five_prime_UTR	10775998	10776001	+
GWHAAZE00000005	CDS	10776002	10776191	+
GWHAAZE00000005	CDS	10776369	10776553	+
GWHAAZE00000005	CDS	10776711	10776893	+
GWHAAZE00000005	CDS	10777151	10777282	+
GWHAAZE00000005	CDS	10777449	10777634	+
GWHAAZE00000005	CDS	10778108	10778197	+
GWHAAZE00000005	CDS	10778284	10778367	+
GWHAAZE00000005	CDS	10779138	10779263	+
GWHAAZE00000005	CDS	10779664	10779918	+
GWHAAZE00000005	three_prime_UTR	10779919	10780011	+

Transcript Sequence
>GWHTAAZE017804 GTAATACATATTTTGCATGTCTCAAGGGAAATTGATACAATTTTGCATATCTCAAGGGTCAAACTGTATTTAACAAAAACATGAGGGATAGCTTATGTAAATAAGTGGATACATCTCATTTTGCTGAGTCAGAGGGAAAATATAATATTGGAAGCTCCAATCACTTTCCTTTTCATCGCTTAATTTCTGAAATCCATTTTTTTTAACGTCTCTTTCTATTGAGGTATTACAAAGCTGCTGCTAATCACAGAGAGGAAGATGAATACATAGTGAGCTTGAATGTAATTTAGTTCCAATTCAAGGAAAATGGATGGACAAATGGGCAGAGGAGGCATTAGTGCTGAAATGCCTCTACGTAATTACAAGCTTGGGAAAACTCTTGGGCATGGTTCCTTTGGTAAGGTCAAAATTGCTGAGCATACACTTACAGGGTATAAAGTAGCTATCAAAATTCTAAATCGACGTAAAATGAAGACTCCTGATATGGAGGAGAAAGTGAGGAGAGAAATCAAAATATGTAGATTGTTTGTACATCCACATATTATACGGCTTTATGAGGTTATAGAGACACCAGCAGATATATATGTTGTAATGGAGTATGTGAAGGCTGGAGAGCTCTTTGATTATATTGTAGAGAAGGGTAGATTACAGGAGGATGAAGCTCGGAGTTTTTTCCAGCAGATTATTTCTGGAGTGGAGTACTGCCACAGAAACATGGTGGTTCATCGCGACCTTAAGCCTGAAAACTTACTTTTAGATTCTAGAGGTAATGTGAAGATAGCTGATTTTGGCTTGAGCAATATCATGCGAGACGGCCATTTTCTGAAGACAAGTTGTGGAAGCCCAAACTATGCTGCTCCAGAGGTTGTTTCGGGTAAACTATATGCTGGGCCCGAGATAGATGTGTGGAGTTGTGGTGTTATCCTGTATGCTCTTCTTTGTGGTATTCTTCCTTTTGATGATGAAAACATTCCCAACCTGTTCAAGAAAATAAAGGGTGGAATCTATACCCTGCCAAGTCATTTGTCACCTGGAGCAAGGGATTTGATTCCAAGATTGCTTGTGGTTGATCCAATGAAGCGAATGACTATTCCTGAGATCCGTCAGCACCCATGGTTCAAAGTTCGCCTTCCTCGATATTTAGCTGTCCCAGCACCTGATGTGATGCAACATTTAAAAAAGATTGATGAGGTGATTCTTAAGGAAGTTGTTAGAATGGGATTCGACATGACCCAGTTGGTTGAATCTCTTCAGCATAGAAGTCAAAATGATGCTACAGTTGCATATTATTTGCTCGTTGACAACCGTTCCCCAGTTTCCAATGGATATCTAGGAGCTGAGTTTCAGGAGTTGATGGAGGGTGGTCCTGCTAGTATGCACCAAGATGGTGCTTTACATATGGCTGTTGGGCACAGTTTTCCTCAGGATACCTCTTTCAGGCCCAAGTTGCCAAGTGACAGAAAATGGCGTCTTGGACTGCAGTCTCCAGCCCATCCTCGTGAGATAATGACACAGGTTCTTGGAGCTCTACAAGAACTACATGTTTCCTGGAAAAAAATTGGGCACTATAACATGAAGTGCCGTTGGCTTCGTACTATTGCAAATGACATTACATCTCAGGGTGTTGTCAAGTTTGAAATACAGGTGCTTCATTTCTCATTCGCCAATGCACTTTATGGAAAATGTCAACATTATCCTGTGTTGAGAATGTCATATTATGATGATTTTGTAGATTAAATGTTTTAATCCTAGTTTTCGTGACAATAAAATGACAGCTATACAAAACTCGTGATGACAAGTATCTGCTTGATCTACAGAGGGTTAGTGGCC

Network for GWHGAAZE017784

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	19	271	1.30E-78

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_AMPK

KEGG pathway

KO	Enzyme	pathway	mapID
K07198	PRKAA, AMPK	Apelin signaling pathway	map04371
		FoxO signaling pathway	map04068
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		mTOR signaling pathway	map04150
		Autophagy - animal	map04140
		Tight junction	map04530
		Insulin signaling pathway	map04910
		Glucagon signaling pathway	map04922
		Adipocytokine signaling pathway	map04920
		Oxytocin signaling pathway	map04921
		Axon regeneration	map04361
		Longevity regulating pathway	map04211
		Longevity regulating pathway - multiple species	map04213
		Circadian rhythm	map04710
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.920
	SRR3591706	second leaf	11.948
	SRR3591707	mature leaf	16.386
	SRR3591708	Shoot apex	25.053
	SRR3591709	Stem	42.581
	SRR3591710	White floral bud	28.814
	SRR3591711	White flower	25.945
	SRR3591712	Green floral bud	15.876
	SRR3591713	Yellow flower	38.688
SRP173429	SRR8316895	Juvenile bud stage	14.755
	SRR8316896	Juvenile bud stage	19.691
	SRR8316897	Juvenile bud stage	8.693
	SRR8316894	Third green stage	8.993
	SRR8316900	Third green stage	22.611
	SRR8316901	Third green stage	20.314
	SRR8316898	Complete white stage	21.953
	SRR8316899	Complete white stage	35.733
	SRR8316903	Complete white stage	36.135
	SRR8316902	Silver flowering stage	18.310
	SRR8316904	Silver flowering stage	27.481
	SRR8316905	Silver flowering stage	10.831
	SRR8316906	Gold flowering stage	42.762
	SRR8316907	Gold flowering stage	36.805
	SRR8316908	Gold flowering stage	45.076
SRP132670	SRR6706286	Control	16.137
	SRR6706287	Light intensity 50%	19.631
	SRR6706288	Light intensity 20%	17.431
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.323
	CNS0095593	Slightly white alabastrum(diploid) 2	12.662
	CNS0095594	Slightly white alabastrum(diploid) 3	11.179
	CNS0095595	Whole white alabastrum(diploid) 2	11.793
	CNS0095596	Whole white alabastrum(diploid) 3	11.259
	CNS0095597	Whole white alabastrum(diploid) 4	11.704
	CNS0095598	Silvery flower (diploied) 1	19.564
	CNS0095599	Silvery flower (diploied) 2	15.173
	CNS0095600	Silvery flower (diploied) 3	35.321
	CNS0095601	Golden flower (diploid) 1	18.601
	CNS0095602	Golden flower (diploid) 2	34.426
	CNS0095603	Golden flower (diploid) 3	30.380
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.463
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.068
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.985
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.268
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.014
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.129
	CNS0095610	Silvery flower (tetraploid) 1	41.700
	CNS0095611	Silvery flower (tetraploid) 2	45.146
	CNS0095612	Silvery flower (tetraploid) 3	49.213
	CNS0095613	Golden flower (tetraploid) 1	41.252
	CNS0095614	Golden flower (tetraploid) 2	45.949
	CNS0095615	Golden flower (tetraploid) 3	101.473
CRA001975	CRR073297	Stem 1	19.847
	CRR073298	Stem 2	17.432
	CRR073299	Stem 3	18.594
	CRR073300	Leaf 1	21.123
	CRR073301	Leaf 2	17.035
	CRR073302	Leaf 3	18.833
	CRR073303	Juvenile bud 1	17.047
	CRR073304	Juvenile bud 2	16.251
	CRR073305	Juvenile bud 3	17.702
	CRR073306	Third green 1	23.848
	CRR073307	Third green 2	18.276
	CRR073308	Third green 3	19.635
	CRR073309	Second white 1	19.170
	CRR073310	Second white 2	25.306
	CRR073311	Second white 3	26.351
	CRR073312	Silver flowering 1	31.281
	CRR073313	Silver flowering 2	20.368
	CRR073314	Silver flowering 3	21.155
	CRR073315	Gold flowering 1	6.397
	CRR073316	Gold flowering 2	10.580
	CRR073317	Gold flowering 3	6.221
	CRR073318	Tawny withering 1	23.810
	CRR073319	Tawny withering 2	17.220
	CRR073320	Tawny withering 3	20.493