Gene detail

Detail information of GWHGAAZE017781

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP18308.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|F4I114\|Y1960_ARATH	Probable serine/threonine-protein kinase At1g09600
trEMBL	tr\|A0A068VF37\|A0A068VF37_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_223 {ECO:0000313\|EMBL:CDP18308.1}
TAIR10	AT1G18670.1	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	10728909	10732981	+
GWHAAZE00000005	mRNA	10728909	10732981	+
GWHAAZE00000005	exon	10728909	10729259	+
GWHAAZE00000005	exon	10729687	10729971	+
GWHAAZE00000005	exon	10730317	10730634	+
GWHAAZE00000005	exon	10731026	10731253	+
GWHAAZE00000005	exon	10731453	10731550	+
GWHAAZE00000005	exon	10731629	10731699	+
GWHAAZE00000005	exon	10731780	10732333	+
GWHAAZE00000005	exon	10732462	10732594	+
GWHAAZE00000005	exon	10732935	10732981	+
GWHAAZE00000005	CDS	10728909	10729259	+
GWHAAZE00000005	CDS	10729687	10729971	+
GWHAAZE00000005	CDS	10730317	10730634	+
GWHAAZE00000005	CDS	10731026	10731253	+
GWHAAZE00000005	CDS	10731453	10731550	+
GWHAAZE00000005	CDS	10731629	10731699	+
GWHAAZE00000005	CDS	10731780	10732333	+
GWHAAZE00000005	CDS	10732462	10732594	+
GWHAAZE00000005	CDS	10732935	10732981	+

Transcript Sequence
>GWHTAAZE017801 ATGGGTTGTGTGAGCTCAAAGCAGGCAGTGTCGGTCACGCCGACGTTAGACCATTCCGGTGTGTTCAGGGACAATGCGGGTTTGGGTTCGGGTCGGAGCAGGTGTGGGAGTGTTGTGGAATTGGAGAAGAATAAGAAGAAGCAGAGGAGTGATTCCGGGTTGAGTGGGACCGAGTTGGGCGGGTCGGGTCGGGCGAGTGAGTCAGTGAGTTTTAGGTTGGGGAATTTGCAGAAGTATGTGGAAGGAGAGCAAGTGGCTGCGGGTTGGCCAGCTTGGCTCAGTGCTGTTGCTGGTGAAGCCATTCATGGTTGGGTTCCCCTTAAAGCCGACTCTTTCGAGAAATTAGAAAAGATTGGACAAGGTACGTATAGCAATGTATTCCGAGCACGTGACCTAGAAACTGGGAGAATAGTTGCACTGAAGAAGGTACGATTTGACAATTTTGAGCCCGAAAGCGTACGGTTTATGGCTAGAGAAATATTGATACTTCGCAGGCTTGATCATCCAAATATAATAAAGTTGGAGGGGATAATTACCTCCCGGTTATCGAGTAGCATATACCTTGTATTTGAGTACATGGAGCATGATATTTCTGGACTATTATCTTGCCCAGGCATCAAGTTCACTGAAGCACAGGTTAAATGCTATATGAAACAGTTATTATGTGGAATTGAGCACTGTCATGCTAGGGGTGTGATGCATAGGGACATCAAAGGCGCTAATCTTCTTGTAAATAATGAAGGTGTAATGAAGGTAGCTGATTTTGGCTTAGCAAACTTCTGTAACAGGGGGCACAGGCAGCCTCTAACCAGTAGAGTCGTCACTCTATGGTATCGTCCTCCTGAACTTTTGTTGGGCTCTACGGATTATGAAGCTTCCGTCGATCTTTGGAGTGTTGGCTGTGTTTTTGCAGAACTACTCCTTGGTACACCAATCCTTCAGGGGAGAACTGAGGTTGAGCAGTTGCATAAAATCTTTAAGCTGTGTGGCTCCCCACCTGATGATTACTGGAAAACGTCTAAACTTCCTCACGCGACTCTGTTTAAACCACAACATCCTTATGAAAGCTGTCTTTTCGAGACCTTCAAAGATCTACCTAAAACTACCGTCTATCTCATAGAAACTTTGCTTTCTGTGGAACCGTACAAGCGTGGGACAGCCTCTTCTGCACTTGCATCTGAGTATTTCACAACAAAGCCTTATTCATGCGACCCATCAAGCTTGCCAAAATACCCACCAAGCAAAGAGATTGATGCAAAACATCGTGAGGACGCAGCAAGTAAAAGGCATAGTGGGAGAACCCGCGGACCTGAAGCAACAAAAAAGTTGTCTAGAAAGCAGAACGGCATCATTTTTAAGGGAAGTAAATATGATTTGGTGCAGAGTTTGCCGGCCCGAGTTCACCCTACCTATAAAACAACTCGAACTCGTGTGGATAATCAGAAAGGGGATATTGTCTTAGGTGTAGAGCAACTTAGGCCATCAATCAATGTAATCGAGGAGGCTTCCCATGTAAAGAATGCATCTCAAGGAGACGTCCCCTTTTCGGGTCCACTAGAAGTTTCTGGATCGAGTGGTTTTGCATGGGCCAAAAGGAGAATAATAGATGATTCATCATCTGTAAGATCACGAAGTAGGTCTAGCTCAAGAAGTCTGATTTTTGAGCACTCAGGTGCATTGCATTTAAAGAATAGTTTCGACTCTAAGCGTCAAGAAAATGTCGAACTCGTTCTTGGAAGCCGCACCAATTCCAAGGGCCATGATTCCTATGAGATTCTGAGGCATAAAAACTGGAGCCAATTGGAGGGTCCGGATTCTTTTGATGCTTCGGAAGGGTACCACTCGCAAGAACTGTCACTGGCACTTTATGAGAGAGAGGAGATGGCTGCCAAGAGAATTAATTTGGTTTATCAGGATGAAGGGAACATGGTTGAATTTTCAGGGCCGTTATTATCTCAACCCCACAGAGTTGATGAACTATTAGAGAGGCACGAGCGCCACATACGCCAAGCAGTTCGGCGAACATGGTTCCAAAGAGGTAAGAAACATCGAAAGGCAATGGACGGCGTTCTCGGATTCAAGTAA

Network for GWHGAAZE017781

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	112	396	4.50E-68

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-CRK7-CDK9

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.718
	SRR3591706	second leaf	12.535
	SRR3591707	mature leaf	7.133
	SRR3591708	Shoot apex	11.111
	SRR3591709	Stem	10.299
	SRR3591710	White floral bud	0.508
	SRR3591711	White flower	0.982
	SRR3591712	Green floral bud	2.270
	SRR3591713	Yellow flower	0.123
SRP173429	SRR8316895	Juvenile bud stage	6.775
	SRR8316896	Juvenile bud stage	6.418
	SRR8316897	Juvenile bud stage	4.433
	SRR8316894	Third green stage	2.768
	SRR8316900	Third green stage	5.119
	SRR8316901	Third green stage	5.323
	SRR8316898	Complete white stage	0.342
	SRR8316899	Complete white stage	6.994
	SRR8316903	Complete white stage	0.620
	SRR8316902	Silver flowering stage	0.134
	SRR8316904	Silver flowering stage	0.354
	SRR8316905	Silver flowering stage	0.033
	SRR8316906	Gold flowering stage	0.148
	SRR8316907	Gold flowering stage	0.166
	SRR8316908	Gold flowering stage	0.416
SRP132670	SRR6706286	Control	5.000
	SRR6706287	Light intensity 50%	5.385
	SRR6706288	Light intensity 20%	6.090
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.588
	CNS0095593	Slightly white alabastrum(diploid) 2	4.737
	CNS0095594	Slightly white alabastrum(diploid) 3	3.989
	CNS0095595	Whole white alabastrum(diploid) 2	3.131
	CNS0095596	Whole white alabastrum(diploid) 3	2.786
	CNS0095597	Whole white alabastrum(diploid) 4	2.264
	CNS0095598	Silvery flower (diploied) 1	2.256
	CNS0095599	Silvery flower (diploied) 2	2.542
	CNS0095600	Silvery flower (diploied) 3	1.686
	CNS0095601	Golden flower (diploid) 1	2.399
	CNS0095602	Golden flower (diploid) 2	1.401
	CNS0095603	Golden flower (diploid) 3	1.248
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.991
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.937
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.302
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.807
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.732
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.264
	CNS0095610	Silvery flower (tetraploid) 1	0.610
	CNS0095611	Silvery flower (tetraploid) 2	0.448
	CNS0095612	Silvery flower (tetraploid) 3	1.211
	CNS0095613	Golden flower (tetraploid) 1	0.220
	CNS0095614	Golden flower (tetraploid) 2	0.318
	CNS0095615	Golden flower (tetraploid) 3	0.127
CRA001975	CRR073297	Stem 1	12.927
	CRR073298	Stem 2	13.483
	CRR073299	Stem 3	10.991
	CRR073300	Leaf 1	10.889
	CRR073301	Leaf 2	11.596
	CRR073302	Leaf 3	9.729
	CRR073303	Juvenile bud 1	6.579
	CRR073304	Juvenile bud 2	2.528
	CRR073305	Juvenile bud 3	10.296
	CRR073306	Third green 1	0.678
	CRR073307	Third green 2	0.500
	CRR073308	Third green 3	0.937
	CRR073309	Second white 1	0.245
	CRR073310	Second white 2	0.305
	CRR073311	Second white 3	0.081
	CRR073312	Silver flowering 1	0.084
	CRR073313	Silver flowering 2	0.266
	CRR073314	Silver flowering 3	0.617
	CRR073315	Gold flowering 1	8.063
	CRR073316	Gold flowering 2	13.447
	CRR073317	Gold flowering 3	7.520
	CRR073318	Tawny withering 1	24.907
	CRR073319	Tawny withering 2	15.676
	CRR073320	Tawny withering 3	31.640