Gene detail

Detail information of GWHGAAZE017770

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002514702.1	9.0953E-71	DNA binding protein, putative [Ricinus communis]
Swissprot	tr\|Q8GZ38\|UNE10_ARATH	2E-32	Transcription factor UNE10
trEMBL	tr\|B9RLT3\|B9RLT3_RICCO	3E-71	DNA binding protein, putative {ECO:0000313\|EMBL:EEF47808.1}
TAIR10	AT4G00050.1	6E-22	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	10615991	10617599	+
GWHAAZE00000005	mRNA	10615991	10617599	+
GWHAAZE00000005	exon	10615991	10616071	+
GWHAAZE00000005	exon	10616208	10616735	+
GWHAAZE00000005	exon	10617016	10617117	+
GWHAAZE00000005	exon	10617273	10617338	+
GWHAAZE00000005	exon	10617522	10617599	+
GWHAAZE00000005	five_prime_UTR	10615991	10616071	+
GWHAAZE00000005	five_prime_UTR	10616208	10616234	+
GWHAAZE00000005	CDS	10616235	10616735	+
GWHAAZE00000005	CDS	10617016	10617117	+
GWHAAZE00000005	CDS	10617273	10617338	+
GWHAAZE00000005	CDS	10617522	10617599	+

Transcript Sequence
>GWHTAAZE017790 GCGATCTAACAGTAACAAATCATCCACTCCTCACGTGCACAATCATCACCACCAGAATCCCACTTTTGCTACTGTCCCCATGTCAAATTATAAAGTAGCAGAGCTAACATGGGAAAAAGGGCATCCAGCCATGCATGGGCTTGGAGGGGTCTTTACCAATGCCCCAGTTACCAAGGTACCCCTACATCCACATGGTGTAGGCCAGGGGATGATAGTACACTAGAATCCATTGTTCATCAAGCTACTACTCCATCCCACAAATTACTCATCAACAACAACCACCACCAAATTACTCACAAAAAACTTGCAAATATAAGCTCCACCGCTGCTTCTTCAAGTGGAAAATGGACCGATACCTCGGGCTACCAACAAATAAACCCTAGCTTCGCTAGAAAAAGGACGCGCTCTGAATCAAACCAATGTGGCAAAAAGTTCAGTAAGATCCAAGAAGAGTGTGTTGACTTAAGTGCGTGTGCTAGTGCCAGTGCCACATTTAGCCAGGATAATGATATGACTATGATGACATGGCCTTCCTTCGAATCTCCTCGGAGTTCAAAGAACCCGATTACTGCTACAGATGAAGATCATCCAGCTTTTCGTCGCAGCTCGGAAAAAGTGGACGACGAAGAGTGGAAGAACAACGAGGAAACAATCAGATCGCACTCGACAAGGCGAAGCAGAGCTGCGGCTATTCATAATCAGTCTGAAAGGAAACGCAGGGATAAGATCAATCAGAAGATGAAAGCTCTTCAGAAGCTGGTGCCAAACGCTAGTAAGACGGATAAAGCGTCGATGCTGGACGAGGTGATAGAGTACTTAAAACAACTTCAAGCACAAGTACAAATGATGAATCTG

Network for GWHGAAZE017770

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	196	241	7.70E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.210
	SRR3591706	second leaf	62.681
	SRR3591707	mature leaf	48.926
	SRR3591708	Shoot apex	8.142
	SRR3591709	Stem	0.880
	SRR3591710	White floral bud	0.855
	SRR3591711	White flower	0.354
	SRR3591712	Green floral bud	0.465
	SRR3591713	Yellow flower	0.115
SRP173429	SRR8316895	Juvenile bud stage	2.019
	SRR8316896	Juvenile bud stage	1.404
	SRR8316897	Juvenile bud stage	1.708
	SRR8316894	Third green stage	0.733
	SRR8316900	Third green stage	0.910
	SRR8316901	Third green stage	0.653
	SRR8316898	Complete white stage	0.040
	SRR8316899	Complete white stage	0.951
	SRR8316903	Complete white stage	0.157
	SRR8316902	Silver flowering stage	0.043
	SRR8316904	Silver flowering stage	0.083
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.228
	SRR8316907	Gold flowering stage	0.144
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	3.451
	SRR6706287	Light intensity 50%	3.829
	SRR6706288	Light intensity 20%	4.327
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.541
	CNS0095593	Slightly white alabastrum(diploid) 2	1.500
	CNS0095594	Slightly white alabastrum(diploid) 3	1.502
	CNS0095595	Whole white alabastrum(diploid) 2	0.625
	CNS0095596	Whole white alabastrum(diploid) 3	0.817
	CNS0095597	Whole white alabastrum(diploid) 4	0.610
	CNS0095598	Silvery flower (diploied) 1	0.109
	CNS0095599	Silvery flower (diploied) 2	0.216
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.250
	CNS0095602	Golden flower (diploid) 2	0.222
	CNS0095603	Golden flower (diploid) 3	0.063
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.638
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.243
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.036
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.921
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.733
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.662
	CNS0095610	Silvery flower (tetraploid) 1	0.141
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.149
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	7.311
	CRR073298	Stem 2	7.242
	CRR073299	Stem 3	4.564
	CRR073300	Leaf 1	7.224
	CRR073301	Leaf 2	8.257
	CRR073302	Leaf 3	4.830
	CRR073303	Juvenile bud 1	2.582
	CRR073304	Juvenile bud 2	1.249
	CRR073305	Juvenile bud 3	3.598
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.603
	CRR073308	Third green 3	0.443
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.369
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.378
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	37.564
	CRR073316	Gold flowering 2	50.888
	CRR073317	Gold flowering 3	19.180
	CRR073318	Tawny withering 1	0.437
	CRR073319	Tawny withering 2	2.684
	CRR073320	Tawny withering 3	0.384