Detail information of GWHGAAZE017767


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009761175.16.0592E-148PREDICTED: SNAP25 homologous protein SNAP33 [Nicotiana sylvestris]
Swissprottr|Q9S7P9|SNP33_ARATH3E-115SNAP25 homologous protein SNAP33
trEMBLtr|A0A068VAA7|A0A068VAA7_COFCA1E-139Coffea canephora DH200=94 genomic scaffold, scaffold_164 {ECO:0000313|EMBL:CDP17499.1}
TAIR10AT5G61210.14E-82soluble N-ethylmaleimide-sensitive factor adaptor protein 33

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1058306910585098+
GWHAAZE00000005mRNA1058306910585098+
GWHAAZE00000005exon1058306910583509+
GWHAAZE00000005exon1058413310584226+
GWHAAZE00000005exon1058439010584520+
GWHAAZE00000005exon1058481410585098+
GWHAAZE00000005CDS1058306910583509+
GWHAAZE00000005CDS1058413310584226+
GWHAAZE00000005CDS1058439010584520+
GWHAAZE00000005CDS1058481410585098+
Transcript Sequence

Network for GWHGAAZE017767

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K18211SNAP25 Insulin secretion map04911
Synaptic vesicle cyclemap04721

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.216
SRR3591706second leaf11.327
SRR3591707mature leaf19.379
SRR3591708Shoot apex19.813
SRR3591709Stem19.241
SRR3591710White floral bud33.287
SRR3591711White flower44.987
SRR3591712Green floral bud26.335
SRR3591713Yellow flower40.322
SRP173429 SRR8316895Juvenile bud stage 13.702
SRR8316896Juvenile bud stage 19.798
SRR8316897Juvenile bud stage 12.603
SRR8316894Third green stage 7.439
SRR8316900Third green stage 24.660
SRR8316901Third green stage 22.454
SRR8316898Complete white stage 15.567
SRR8316899Complete white stage 40.484
SRR8316903Complete white stage 20.389
SRR8316902Silver flowering stage18.707
SRR8316904Silver flowering stage24.462
SRR8316905Silver flowering stage12.982
SRR8316906Gold flowering stage 44.225
SRR8316907Gold flowering stage 38.483
SRR8316908Gold flowering stage 41.305
SRP132670SRR6706286Control19.736
SRR6706287Light intensity 50%22.199
SRR6706288Light intensity 20%25.351
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.233
CNS0095593Slightly white alabastrum(diploid) 225.509
CNS0095594Slightly white alabastrum(diploid) 320.860
CNS0095595Whole white alabastrum(diploid) 219.634
CNS0095596Whole white alabastrum(diploid) 310.336
CNS0095597Whole white alabastrum(diploid) 414.474
CNS0095598Silvery flower (diploied) 121.680
CNS0095599Silvery flower (diploied) 230.092
CNS0095600Silvery flower (diploied) 336.889
CNS0095601Golden flower (diploid) 131.734
CNS0095602Golden flower (diploid) 228.755
CNS0095603Golden flower (diploid) 328.866
CNS0095604Slightly white alabastrum(tetraploid) 116.555
CNS0095605Slightly white alabastrum(tetraploid) 215.902
CNS0095606Slightly white alabastrum(tetraploid) 330.169
CNS0095607Whole white alabastrum(tetraploid) 114.604
CNS0095608Whole white alabastrum(tetraploid) 213.949
CNS0095609Whole white alabastrum(tetraploid) 320.251
CNS0095610Silvery flower (tetraploid) 135.307
CNS0095611Silvery flower (tetraploid) 231.831
CNS0095612Silvery flower (tetraploid) 338.443
CNS0095613Golden flower (tetraploid) 130.307
CNS0095614Golden flower (tetraploid) 231.447
CNS0095615Golden flower (tetraploid) 322.452
CRA001975CRR073297Stem 113.282
CRR073298Stem 214.199
CRR073299Stem 312.624
CRR073300Leaf 116.974
CRR073301Leaf 218.202
CRR073302Leaf 314.755
CRR073303Juvenile bud 117.263
CRR073304Juvenile bud 214.108
CRR073305Juvenile bud 320.397
CRR073306Third green 120.534
CRR073307Third green 217.196
CRR073308Third green 316.159
CRR073309Second white 130.526
CRR073310Second white 230.918
CRR073311Second white 329.528
CRR073312Silver flowering 135.472
CRR073313Silver flowering 242.530
CRR073314Silver flowering 334.535
CRR073315Gold flowering 118.972
CRR073316Gold flowering 225.589
CRR073317Gold flowering 315.281
CRR073318Tawny withering 125.539
CRR073319Tawny withering 250.155
CRR073320Tawny withering 320.783