Detail information of GWHGAAZE017761


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP18398.11.12816E-47unnamed protein product [Coffea canephora]
trEMBLtr|A0A068VFC5|A0A068VFC5_COFCA4E-48Coffea canephora DH200=94 genomic scaffold, scaffold_232 {ECO:0000313|EMBL:CDP18398.1}
TAIR10AT1G32490.16E-25RNA helicase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1052945610530162-
GWHAAZE00000005mRNA1052945610530162-
GWHAAZE00000005exon1053006910530162-
GWHAAZE00000005exon1052980610529933-
GWHAAZE00000005exon1052945610529671-
GWHAAZE00000005CDS1053006910530162-
GWHAAZE00000005CDS1052980610529933-
GWHAAZE00000005CDS1052945610529671-
Transcript Sequence

Network for GWHGAAZE017761

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01480.18PWI4633.00E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12813DHX16 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0006397biological_processmRNA processing

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.575
SRR3591706second leaf5.068
SRR3591707mature leaf4.909
SRR3591708Shoot apex5.667
SRR3591709Stem7.015
SRR3591710White floral bud10.446
SRR3591711White flower8.896
SRR3591712Green floral bud7.923
SRR3591713Yellow flower8.588
SRP173429 SRR8316895Juvenile bud stage 5.625
SRR8316896Juvenile bud stage 11.679
SRR8316897Juvenile bud stage 4.314
SRR8316894Third green stage 4.576
SRR8316900Third green stage 5.846
SRR8316901Third green stage 8.610
SRR8316898Complete white stage 2.978
SRR8316899Complete white stage 8.951
SRR8316903Complete white stage 7.853
SRR8316902Silver flowering stage3.708
SRR8316904Silver flowering stage8.585
SRR8316905Silver flowering stage2.460
SRR8316906Gold flowering stage 12.824
SRR8316907Gold flowering stage 10.067
SRR8316908Gold flowering stage 12.349
SRP132670SRR6706286Control10.971
SRR6706287Light intensity 50%11.304
SRR6706288Light intensity 20%10.775
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.141
CNS0095593Slightly white alabastrum(diploid) 21.398
CNS0095594Slightly white alabastrum(diploid) 32.583
CNS0095595Whole white alabastrum(diploid) 23.198
CNS0095596Whole white alabastrum(diploid) 32.593
CNS0095597Whole white alabastrum(diploid) 44.159
CNS0095598Silvery flower (diploied) 14.927
CNS0095599Silvery flower (diploied) 24.646
CNS0095600Silvery flower (diploied) 37.831
CNS0095601Golden flower (diploid) 16.956
CNS0095602Golden flower (diploid) 29.199
CNS0095603Golden flower (diploid) 310.424
CNS0095604Slightly white alabastrum(tetraploid) 12.521
CNS0095605Slightly white alabastrum(tetraploid) 22.386
CNS0095606Slightly white alabastrum(tetraploid) 310.884
CNS0095607Whole white alabastrum(tetraploid) 14.591
CNS0095608Whole white alabastrum(tetraploid) 22.582
CNS0095609Whole white alabastrum(tetraploid) 36.647
CNS0095610Silvery flower (tetraploid) 19.884
CNS0095611Silvery flower (tetraploid) 28.089
CNS0095612Silvery flower (tetraploid) 36.958
CNS0095613Golden flower (tetraploid) 14.449
CNS0095614Golden flower (tetraploid) 29.592
CNS0095615Golden flower (tetraploid) 37.704
CRA001975CRR073297Stem 112.624
CRR073298Stem 211.927
CRR073299Stem 36.946
CRR073300Leaf 19.835
CRR073301Leaf 26.785
CRR073302Leaf 35.453
CRR073303Juvenile bud 15.724
CRR073304Juvenile bud 22.047
CRR073305Juvenile bud 38.082
CRR073306Third green 11.449
CRR073307Third green 22.991
CRR073308Third green 32.494
CRR073309Second white 12.017
CRR073310Second white 23.937
CRR073311Second white 34.793
CRR073312Silver flowering 11.980
CRR073313Silver flowering 22.251
CRR073314Silver flowering 30.878
CRR073315Gold flowering 11.676
CRR073316Gold flowering 27.148
CRR073317Gold flowering 31.555
CRR073318Tawny withering 14.149
CRR073319Tawny withering 20.743
CRR073320Tawny withering 34.459