Detail information of GWHGAAZE017760


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP18397.10unnamed protein product [Coffea canephora]
Swissprottr|Q38953|DHX8_ARATH0Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBLtr|A0A068VCT9|A0A068VCT9_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_232 {ECO:0000313|EMBL:CDP18397.1}
TAIR10AT1G32490.10RNA helicase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1051846310529550-
GWHAAZE00000005mRNA1051846310529550-
GWHAAZE00000005exon1052941510529550-
GWHAAZE00000005exon1052927410529345-
GWHAAZE00000005exon1052861110528694-
GWHAAZE00000005exon1052787110527904-
GWHAAZE00000005exon1052769910527753-
GWHAAZE00000005exon1052682310526882-
GWHAAZE00000005exon1052658810526659-
GWHAAZE00000005exon1052589910525962-
GWHAAZE00000005exon1052510010525179-
GWHAAZE00000005exon1052489410524961-
GWHAAZE00000005exon1052475710524814-
GWHAAZE00000005exon1052450510524562-
GWHAAZE00000005exon1052434410524409-
GWHAAZE00000005exon1052314610523214-
GWHAAZE00000005exon1052289210522981-
GWHAAZE00000005exon1052218510522271-
GWHAAZE00000005exon1052182310521938-
GWHAAZE00000005exon1052166810521734-
GWHAAZE00000005exon1052045810521504-
GWHAAZE00000005exon1051983610519898-
GWHAAZE00000005exon1051953010519653-
GWHAAZE00000005exon1051927110519371-
GWHAAZE00000005exon1051901710519079-
GWHAAZE00000005exon1051884410518916-
GWHAAZE00000005exon1051846310518760-
GWHAAZE00000005five_prime_UTR1052941810529550-
GWHAAZE00000005CDS1052941510529417-
GWHAAZE00000005CDS1052927410529345-
GWHAAZE00000005CDS1052861110528694-
GWHAAZE00000005CDS1052787110527904-
GWHAAZE00000005CDS1052769910527753-
GWHAAZE00000005CDS1052682310526882-
GWHAAZE00000005CDS1052658810526659-
GWHAAZE00000005CDS1052589910525962-
GWHAAZE00000005CDS1052510010525179-
GWHAAZE00000005CDS1052489410524961-
GWHAAZE00000005CDS1052475710524814-
GWHAAZE00000005CDS1052450510524562-
GWHAAZE00000005CDS1052434410524409-
GWHAAZE00000005CDS1052314610523214-
GWHAAZE00000005CDS1052289210522981-
GWHAAZE00000005CDS1052218510522271-
GWHAAZE00000005CDS1052182310521938-
GWHAAZE00000005CDS1052166810521734-
GWHAAZE00000005CDS1052045810521504-
GWHAAZE00000005CDS1051983610519898-
GWHAAZE00000005CDS1051953010519653-
GWHAAZE00000005CDS1051927110519371-
GWHAAZE00000005CDS1051901710519079-
GWHAAZE00000005CDS1051884410518916-
GWHAAZE00000005CDS1051871710518760-
GWHAAZE00000005three_prime_UTR1051846310518716-
Transcript Sequence

Network for GWHGAAZE017760

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00271.32Helicase_C4735962.90E-13
PF04408.24HA26587325.80E-22
PF07717.17OB_NTP_bind8068832.80E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12813DHX16 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0004386molecular_functionhelicase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.977
SRR3591706second leaf8.034
SRR3591707mature leaf9.821
SRR3591708Shoot apex14.267
SRR3591709Stem12.541
SRR3591710White floral bud16.226
SRR3591711White flower16.453
SRR3591712Green floral bud12.326
SRR3591713Yellow flower13.806
SRP173429 SRR8316895Juvenile bud stage 9.538
SRR8316896Juvenile bud stage 14.423
SRR8316897Juvenile bud stage 8.078
SRR8316894Third green stage 5.554
SRR8316900Third green stage 10.620
SRR8316901Third green stage 11.155
SRR8316898Complete white stage 5.539
SRR8316899Complete white stage 14.089
SRR8316903Complete white stage 10.274
SRR8316902Silver flowering stage6.037
SRR8316904Silver flowering stage9.573
SRR8316905Silver flowering stage4.428
SRR8316906Gold flowering stage 13.477
SRR8316907Gold flowering stage 14.021
SRR8316908Gold flowering stage 14.487
SRP132670SRR6706286Control6.721
SRR6706287Light intensity 50%7.303
SRR6706288Light intensity 20%7.814
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.814
CNS0095593Slightly white alabastrum(diploid) 211.345
CNS0095594Slightly white alabastrum(diploid) 39.762
CNS0095595Whole white alabastrum(diploid) 29.337
CNS0095596Whole white alabastrum(diploid) 37.651
CNS0095597Whole white alabastrum(diploid) 49.212
CNS0095598Silvery flower (diploied) 113.332
CNS0095599Silvery flower (diploied) 211.376
CNS0095600Silvery flower (diploied) 311.359
CNS0095601Golden flower (diploid) 113.365
CNS0095602Golden flower (diploid) 213.187
CNS0095603Golden flower (diploid) 312.156
CNS0095604Slightly white alabastrum(tetraploid) 110.402
CNS0095605Slightly white alabastrum(tetraploid) 28.328
CNS0095606Slightly white alabastrum(tetraploid) 315.139
CNS0095607Whole white alabastrum(tetraploid) 18.512
CNS0095608Whole white alabastrum(tetraploid) 27.802
CNS0095609Whole white alabastrum(tetraploid) 39.844
CNS0095610Silvery flower (tetraploid) 116.882
CNS0095611Silvery flower (tetraploid) 213.158
CNS0095612Silvery flower (tetraploid) 313.410
CNS0095613Golden flower (tetraploid) 110.470
CNS0095614Golden flower (tetraploid) 212.648
CNS0095615Golden flower (tetraploid) 39.808
CRA001975CRR073297Stem 112.472
CRR073298Stem 210.850
CRR073299Stem 35.911
CRR073300Leaf 110.790
CRR073301Leaf 29.015
CRR073302Leaf 35.243
CRR073303Juvenile bud 17.122
CRR073304Juvenile bud 22.885
CRR073305Juvenile bud 37.594
CRR073306Third green 12.862
CRR073307Third green 23.187
CRR073308Third green 33.759
CRR073309Second white 11.779
CRR073310Second white 23.151
CRR073311Second white 33.867
CRR073312Silver flowering 14.120
CRR073313Silver flowering 22.783
CRR073314Silver flowering 33.147
CRR073315Gold flowering 12.924
CRR073316Gold flowering 27.178
CRR073317Gold flowering 31.864
CRR073318Tawny withering 16.213
CRR073319Tawny withering 27.497
CRR073320Tawny withering 36.790