Gene detail

Detail information of GWHGAAZE017754

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010037232.1	PREDICTED: chaperone protein ClpB1 [Eucalyptus grandis]
Swissprot	tr\|P42730\|CLPB1_ARATH	Chaperone protein ClpB1
trEMBL	tr\|A0A059A5G2\|A0A059A5G2_EUCGR	Uncharacterized protein {ECO:0000313\|EMBL:KCW48906.1}
TAIR10	AT1G74310.1	heat shock protein 101

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	10398939	10402210	-
GWHAAZE00000005	mRNA	10398939	10402210	-
GWHAAZE00000005	exon	10398939	10399238	-
GWHAAZE00000005	exon	10399341	10399538	-
GWHAAZE00000005	exon	10399630	10399909	-
GWHAAZE00000005	exon	10400021	10400643	-
GWHAAZE00000005	exon	10400728	10400909	-
GWHAAZE00000005	exon	10401058	10402210	-
GWHAAZE00000005	CDS	10401058	10402210	-
GWHAAZE00000005	CDS	10400728	10400909	-
GWHAAZE00000005	CDS	10400021	10400643	-
GWHAAZE00000005	CDS	10399630	10399909	-
GWHAAZE00000005	CDS	10399341	10399538	-
GWHAAZE00000005	CDS	10398939	10399238	-

Transcript Sequence
>GWHTAAZE017774 ATGAACCCTGACAAATTCACCCACAAGACAAATGAGGCCTTGGCCGGAGCACATGAAATGGCCATGAATGCAGGACATTCACAGTTCACTCCCCTTCATTTGGCCGTGGCTTTAATGTCAGATCCCAATGGTATTTTCCGGCAAGCAGTAGTCAATGCTGGTGGTGGCGACGAGGCTGCAAATTCAGTTGAGAGGGTTTACAACCAAGCAATGAAGAAACTCCCATCTCAAACCCCCCCTCCTGATGAGATCCCTGCAAGCACTTCATTGATCAAGTCAATTCGCCGAGCACAAGCGGCACAAAAGTCCCGTGGCGACACCCATTTAGCTGTTGATCAATTAATCTTGGGTCTTTTGGAAGATTCTCAAATTGGGGATTTACTTAAAGAAGCTGGGGTTAGTCCAGCAAGAGTGAAAGCCGAACTCGACAAACTTAGAGGGAAAGAAGGGAGAAAGGTGGAGAGTGCTTCTGGTGACACAACATTTCAAGCTCTCAAGACCTACGGCCGCGATCTTGTAGAACAAGCTGGAAAGCTTGATCCAGTCATAGGCAGGGATGAGGAAATTAGAAGGGTTGTTAGGATTCTTTCAAGAAGAACCAAGAACAACCCGGTCCTTATTGGAGAGCCCGGTGTGGGTAAAACCGCAGTGGTTGAAGGCCTAGCTCAAAGAATTGTTAGAGGAGATGTTCCTAGTAATCTTGCCGACGTTAGGCTTATAGCTTTGGACATGGGGGCATTGGTAGCCGGAGCAAAGTATAGGGGAGAATTTGAAGAGAGATTGAAAGCTGTTTTGAAGGAAGTAGAAGATGCTGATGGAAAAGTGATCCTGTTTATTGATGAAATCCACCTTGTTCTTGGGGCAGGTCGGACCGAAGGGTCTATGGATGCTGCGAATCTCTTTAAGCCTATGCTCGCTAGAGGCCAGCTACGGTGCATTGGTGCCACAACTCTTGAGGAGTATAGGAAATATGTAGAGAAGGATGCTGCATTTGAGAGGCGTTTCCAACAGGTTTATGTGGCTGAACCTAGTGTTCCTGACACAATTAGTATCCTTCGAGGACTGAAGGAGAGGTATGAAGGACATCATGGTGTTCGAATTCAGGATCGAGCTCTTGTTGTTTCAGCCCAATTGTCTCACCGTTACATTACAGGGCGCCACTTGCCGGACAAGGCCATTGATCTTGTGGATGAAGCCTGTGCAAATGTGAGAGTGCAGCTTGATAGTCAACCTGAAGAAATCGACAATCTTGAAAGGAAGAGGATGCAGTTAGAAGTTGAGCTTCATGCTCTTGAGAAGGAGAAAGACAAAGCTAGCAAAGCTCGGGTTGTCGAAGTAAGAAAAGAGCTTGATGATCTGAGGGACAAGCTGCAACCACTGATGATGAAGTATAGAAAAGAGAAGGAAAGGATTGATGAACTACGTCGGCTCAAAAAGAAACGCGAGGAACTCATGTTTGCCCTACAAGAAGCCGAAAGAAGATATGATTTAGCTAGGGCAGCAGACTTGAAATACGGGGCAATTCAGGAGGTTGAATCTGCTATAGCAAAACTAGAAGGAAATTCAGATGAAAATGTGATGTTGACAGAGACTGTTGGACCGGAACAAATTGCAGAAGTAGTGAGTCGATGGACAGGTATACCAGTGACTAGGCTTGGCCAGAACGAGAAAGAGAGGTTGATTGGCCTTGCTGAGAGGTTGCATCAACGGGTAGTCGGGCAGAATCAAGCCGTCGCTGCTGTTGCTGAAGCTGTGTTGAGGTCAAGAGCCGGTTTAGGAAGGCAACAGCAACCAACCGGTTCATTCCTCTTCTTGGGTCCAACTGGTGTTGGCAAGACTGAGTTAGCGAAGGCTCTTGCAGAACAACTATTTGATGATGACAACCTGTTGATTAGGATTGATATGTCCGAGTATATGGAGCAACACTCTGTTGCTCGATTAATCGGTGCTCCACCTGGTTATGTTGGGCATGAGGAAGGTGGACAACTTACAGAAGCTGTGAGGCGGCGGCCTTATAGTGTTGTGTTGTTTGACGAAGTAGAGAAAGCACACCCCACCGTATTTAACACACTGCTTCAAGTATTGGATGATGGAAGGCTAACGGATGGCCAGGGTCGCACCGTGGACTTCACAAACACTGTGATCATTATGACTTCTAATCTTGGAGCGGAGTATCTCTTAGGTGGACTAATGGGCAAGTGCACCATGGAGAGCGCCCGTGATAGGGTGATGCAAGAGGTGAGGAAGCATTTCAAGCCAGAGTTGCTAAACAGGCTTGATGAAATTGTGGTTTTTGATCCCCTCTCTCATGACCAATTGAGAAAAGTTGCCAGGCTTCAATTGAAGGATGTGGCTAACCGCTTGGCCGAGAGAGGCATTGCCTTAGGTGTCACCGAAGCAGCATTGGATGTCATACTGGCGGAGAGTTATGACCCGGTATATGGTGCAAGGCCTATAAGGAGATGGCTGGAGAAGAAGGTAGTGACAGAATTGTCAAAGATGCTGGTGAGAGAGGAGATAGACGAGAATTCAACAGTGTACATAGATGCAGGTGCAAAAGGAAAAGTGCTAACATATCGGGTCGAAAAGAATGGAGGGCTAGTGAATGCGGCTACCGGAAAGAAGTCGGACATACTAATAGAATTGCCCGGTGGTGGAGCTAGGAGCGATGCAGTGCAAGCTGTGAAGAAGATGAAGATTGAAGAGATAGATGACGATGATGAGATGGATGAGTAA

Network for GWHGAAZE017754

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02861.21	Clp_N	17	64	1.00E-06
PF02861.21	Clp_N	97	147	3.40E-09
PF00004.30	AAA	205	318	3.50E-13
PF17871.2	AAA_lid_9	345	443	3.30E-34
PF07724.15	AAA_2	598	762	1.30E-53
PF10431.10	ClpB_D2-small	768	847	6.70E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03695	clpB	Longevity regulating pathway - multiple species	map04213

Gene Ontology

GO term	Ontology	Name
GO:0019538	biological_process	protein metabolic process
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	49.558
	SRR3591706	second leaf	10.314
	SRR3591707	mature leaf	19.997
	SRR3591708	Shoot apex	17.587
	SRR3591709	Stem	67.157
	SRR3591710	White floral bud	63.684
	SRR3591711	White flower	48.890
	SRR3591712	Green floral bud	54.901
	SRR3591713	Yellow flower	19.804
SRP173429	SRR8316895	Juvenile bud stage	107.679
	SRR8316896	Juvenile bud stage	342.804
	SRR8316897	Juvenile bud stage	145.577
	SRR8316894	Third green stage	19.662
	SRR8316900	Third green stage	59.716
	SRR8316901	Third green stage	66.966
	SRR8316898	Complete white stage	25.653
	SRR8316899	Complete white stage	57.444
	SRR8316903	Complete white stage	47.530
	SRR8316902	Silver flowering stage	46.935
	SRR8316904	Silver flowering stage	58.543
	SRR8316905	Silver flowering stage	34.472
	SRR8316906	Gold flowering stage	101.182
	SRR8316907	Gold flowering stage	107.186
	SRR8316908	Gold flowering stage	72.264
SRP132670	SRR6706286	Control	85.305
	SRR6706287	Light intensity 50%	78.288
	SRR6706288	Light intensity 20%	75.525
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	35.920
	CNS0095593	Slightly white alabastrum(diploid) 2	34.811
	CNS0095594	Slightly white alabastrum(diploid) 3	41.716
	CNS0095595	Whole white alabastrum(diploid) 2	32.723
	CNS0095596	Whole white alabastrum(diploid) 3	34.049
	CNS0095597	Whole white alabastrum(diploid) 4	32.686
	CNS0095598	Silvery flower (diploied) 1	47.232
	CNS0095599	Silvery flower (diploied) 2	287.422
	CNS0095600	Silvery flower (diploied) 3	268.911
	CNS0095601	Golden flower (diploid) 1	440.961
	CNS0095602	Golden flower (diploid) 2	265.741
	CNS0095603	Golden flower (diploid) 3	266.642
	CNS0095604	Slightly white alabastrum(tetraploid) 1	35.020
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.348
	CNS0095606	Slightly white alabastrum(tetraploid) 3	67.214
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.879
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.331
	CNS0095609	Whole white alabastrum(tetraploid) 3	58.142
	CNS0095610	Silvery flower (tetraploid) 1	86.466
	CNS0095611	Silvery flower (tetraploid) 2	131.734
	CNS0095612	Silvery flower (tetraploid) 3	96.124
	CNS0095613	Golden flower (tetraploid) 1	71.494
	CNS0095614	Golden flower (tetraploid) 2	89.118
	CNS0095615	Golden flower (tetraploid) 3	43.128
CRA001975	CRR073297	Stem 1	35.384
	CRR073298	Stem 2	35.696
	CRR073299	Stem 3	40.599
	CRR073300	Leaf 1	40.329
	CRR073301	Leaf 2	38.007
	CRR073302	Leaf 3	31.128
	CRR073303	Juvenile bud 1	37.091
	CRR073304	Juvenile bud 2	28.127
	CRR073305	Juvenile bud 3	52.270
	CRR073306	Third green 1	56.196
	CRR073307	Third green 2	41.824
	CRR073308	Third green 3	53.511
	CRR073309	Second white 1	48.634
	CRR073310	Second white 2	50.627
	CRR073311	Second white 3	46.354
	CRR073312	Silver flowering 1	39.426
	CRR073313	Silver flowering 2	39.873
	CRR073314	Silver flowering 3	37.782
	CRR073315	Gold flowering 1	21.313
	CRR073316	Gold flowering 2	25.693
	CRR073317	Gold flowering 3	20.447
	CRR073318	Tawny withering 1	36.758
	CRR073319	Tawny withering 2	28.917
	CRR073320	Tawny withering 3	36.611