Gene detail

Detail information of GWHGAAZE017743

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002514655.1	1.5016E-57	glycine-rich RNA-binding protein, putative [Ricinus communis]
Swissprot	tr\|Q9FNR1\|RBG3_ARATH	2E-53	Glycine-rich RNA-binding protein 3, mitochondrial (Precursor)
trEMBL	tr\|B9RLN6\|B9RLN6_RICCO	6E-58	Glycine-rich RNA-binding protein, putative {ECO:0000313\|EMBL:EEF47761.1}
TAIR10	AT5G61030.1	9E-45	glycine-rich RNA-binding protein 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	10260180	10261968	+
GWHAAZE00000005	mRNA	10260180	10261968	+
GWHAAZE00000005	exon	10260180	10260315	+
GWHAAZE00000005	exon	10260401	10260469	+
GWHAAZE00000005	exon	10261076	10261123	+
GWHAAZE00000005	exon	10261211	10261317	+
GWHAAZE00000005	exon	10261441	10261968	+
GWHAAZE00000005	CDS	10260180	10260315	+
GWHAAZE00000005	CDS	10260401	10260469	+
GWHAAZE00000005	CDS	10261076	10261123	+
GWHAAZE00000005	CDS	10261211	10261317	+
GWHAAZE00000005	CDS	10261441	10261968	+

Transcript Sequence
>GWHTAAZE017763 ATGGCATTCTTTAGTAAAGCTGGGAGTATACTAAGGCAGACCGTGAGTAAGCACATCAACCAGGAAATATCGGCATCCAAGCCATCTCTCTTCCAAATGATAAGATGCATGTCAAGTTCAAAAGTCTTTGTTGGAGGGCTTGCATATGCCACAGATGACACAAGTCTTAGAGAAGCTTTCAACAAGTATGGGGAAGTTATAGAAGGTGCTCAGTTGGATTTCTCATCCAATGTCTTCTCTGATTGTGCTGATTCAAGAGTCATCGTTGATCGAGAGACTGGTCGATCTAGAGGATTTGGCTTTATTACTTATGCTACCCCTGAGGATGCTTCTTCTGCTATCCAGGCATTGGATGGACAGGATCTACATGGCCGTATGGTACGGGTGAATTATGCAACTGATAGGCCACGGGACTCGGGATTTGGAGGTGGCGGTGGATATGGCGGTGGAGGTTATGGAGGCGGTGGAAGCTATGGGGGTAGTGGAGGCAATTATGGAGGTGGTGGTTATGGAAGTGGAGGTGGTGGAGACAACTATGCAAGTGGAAATAGTTACGGTAGAGGGAGCAATGCAAGCTATGGGAGCGAGACTCAAACTGCTGGATACGGAACTGGAAGTGGCGGTGAAACTTACACGAGTGAAAATAGTTTTGGAAGTGGGACTGGTGCTAGTTATGGCAGTGGTGGCCAGAATGCTGGTGTTGGTGGCGGCAGCGATAACTATGTTAGTGGTGGTGGTGTTGGTGGCAATTTCAAAGATGATGTTGATGAGCCCAGTGACTATGCCAGCGAAGGGTTAAGCAATGAGCCCAGCGACTGTTGCCAGTCTGAACTTGCCTTTGTAAACTCAATTTTGAGTAATTTTCTGCAGTTCAGGCTTTCTGTTTAG

Network for GWHGAAZE017743

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	79	126	2.70E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12741	HNRNPA1_3	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	29.937
	SRR3591706	second leaf	2.633
	SRR3591707	mature leaf	2.923
	SRR3591708	Shoot apex	68.829
	SRR3591709	Stem	16.485
	SRR3591710	White floral bud	6.241
	SRR3591711	White flower	15.398
	SRR3591712	Green floral bud	20.363
	SRR3591713	Yellow flower	3.389
SRP173429	SRR8316895	Juvenile bud stage	27.510
	SRR8316896	Juvenile bud stage	42.550
	SRR8316897	Juvenile bud stage	16.090
	SRR8316894	Third green stage	13.527
	SRR8316900	Third green stage	33.535
	SRR8316901	Third green stage	26.201
	SRR8316898	Complete white stage	0.736
	SRR8316899	Complete white stage	8.652
	SRR8316903	Complete white stage	3.600
	SRR8316902	Silver flowering stage	1.227
	SRR8316904	Silver flowering stage	0.278
	SRR8316905	Silver flowering stage	0.324
	SRR8316906	Gold flowering stage	1.977
	SRR8316907	Gold flowering stage	1.739
	SRR8316908	Gold flowering stage	3.357
SRP132670	SRR6706286	Control	22.487
	SRR6706287	Light intensity 50%	20.416
	SRR6706288	Light intensity 20%	23.104
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.867
	CNS0095593	Slightly white alabastrum(diploid) 2	36.803
	CNS0095594	Slightly white alabastrum(diploid) 3	35.429
	CNS0095595	Whole white alabastrum(diploid) 2	24.757
	CNS0095596	Whole white alabastrum(diploid) 3	30.831
	CNS0095597	Whole white alabastrum(diploid) 4	16.181
	CNS0095598	Silvery flower (diploied) 1	15.166
	CNS0095599	Silvery flower (diploied) 2	10.511
	CNS0095600	Silvery flower (diploied) 3	4.560
	CNS0095601	Golden flower (diploid) 1	9.228
	CNS0095602	Golden flower (diploid) 2	3.521
	CNS0095603	Golden flower (diploid) 3	4.607
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.275
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.336
	CNS0095606	Slightly white alabastrum(tetraploid) 3	39.329
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.212
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.866
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.191
	CNS0095610	Silvery flower (tetraploid) 1	6.754
	CNS0095611	Silvery flower (tetraploid) 2	4.742
	CNS0095612	Silvery flower (tetraploid) 3	3.658
	CNS0095613	Golden flower (tetraploid) 1	2.752
	CNS0095614	Golden flower (tetraploid) 2	4.879
	CNS0095615	Golden flower (tetraploid) 3	0.773
CRA001975	CRR073297	Stem 1	26.009
	CRR073298	Stem 2	24.416
	CRR073299	Stem 3	31.003
	CRR073300	Leaf 1	14.577
	CRR073301	Leaf 2	16.265
	CRR073302	Leaf 3	19.750
	CRR073303	Juvenile bud 1	12.958
	CRR073304	Juvenile bud 2	5.296
	CRR073305	Juvenile bud 3	12.421
	CRR073306	Third green 1	0.445
	CRR073307	Third green 2	0.282
	CRR073308	Third green 3	0.557
	CRR073309	Second white 1	1.188
	CRR073310	Second white 2	0.575
	CRR073311	Second white 3	0.167
	CRR073312	Silver flowering 1	0.292
	CRR073313	Silver flowering 2	0.838
	CRR073314	Silver flowering 3	0.475
	CRR073315	Gold flowering 1	10.697
	CRR073316	Gold flowering 2	12.421
	CRR073317	Gold flowering 3	7.088
	CRR073318	Tawny withering 1	15.222
	CRR073319	Tawny withering 2	17.624
	CRR073320	Tawny withering 3	15.948