Gene detail

Detail information of GWHGAAZE017738

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009795261.1	0	PREDICTED: probable glycerophosphoryl diester phosphodiesterase 3 [Nicotiana sylvestris]
Swissprot	tr\|Q9SD81\|GDPD6_ARATH	0	Glycerophosphodiester phosphodiesterase GDPD6 {ECO:0000305} (Precursor)
trEMBL	tr\|K4C8C0\|K4C8C0_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc06g069470.2.1}
TAIR10	AT5G08030.1	2E-141	PLC-like phosphodiesterases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	10213464	10223153	+
GWHAAZE00000005	mRNA	10213464	10223153	+
GWHAAZE00000005	exon	10213464	10213496	+
GWHAAZE00000005	exon	10213590	10213902	+
GWHAAZE00000005	exon	10217067	10217245	+
GWHAAZE00000005	exon	10217324	10217507	+
GWHAAZE00000005	exon	10221504	10221613	+
GWHAAZE00000005	exon	10221736	10221954	+
GWHAAZE00000005	exon	10222160	10222315	+
GWHAAZE00000005	exon	10222926	10223153	+
GWHAAZE00000005	CDS	10213464	10213496	+
GWHAAZE00000005	CDS	10213590	10213902	+
GWHAAZE00000005	CDS	10217067	10217245	+
GWHAAZE00000005	CDS	10217324	10217507	+
GWHAAZE00000005	CDS	10221504	10221613	+
GWHAAZE00000005	CDS	10221736	10221954	+
GWHAAZE00000005	CDS	10222160	10222315	+
GWHAAZE00000005	CDS	10222926	10223153	+

Transcript Sequence
>GWHTAAZE017758 ATGGTTTTAATATTGATATTGTTGCGATATGATTCCCTACGAGTTGCCAGTCTTCTTGGGACGAAGCTGCAGTTATTTTCCCCCATTGAGGGTGAAGATACTTTGTCGTTTGGAGTGAAGGAGGAGGTGATAAAACTGGAAGGTCAGAGTGAGGTTTGTACCACTGCCTTTGGAGGTTGTAATTTGAATCAGCAGAAGTTGCAGGTCCCGGTGGCGACGGCTCCACATGTTGGAATTACCACTTGGGCGGTGGCTGAATCGGTTGGGAGGAATATTGGGTTTGGTCGGTCCATGCAAACTGTCACATCTGTGGACTATGTGGACGATAATCCATCAATTCAATCTGCTGTTGTCCCTTTTGTATTTCTGCTACTCCTTCTTGGGTGCTCAGCAAGGCCTCTTTATCCGCTCCCTAGCAGAAGGAATGATCCAAATAAACTGCCCCTTCAGACTTTTCGCCCCTTTAATATTGCTCATCGAGGTTCCAATGGAGAAATTCCCGAAGAAACCTCCGCTGCATACTTGAGAGCTATTAACGAGGGTGCAGATTTTATAGAAACAGATATCTTGGCCTCTAAAGATGGTGCTCTTATATGCTTCCATGATGTAACGCTCGATGATACTACTGATGTAGCTCAACACAAGGAGTTTTCAGATCGAAAGAGGACCTATGAGGTACAAGGCGACAACATGACTGGCTTTTTCCCAGGGAAATTTTCTATCATTACGTTCGACGACTTTATTCAAATTGCGCTGGCAGCACCCAGAGTTGTTGGTATCTATCCAGAGATTAAAAATCCTGTATTTATTAACCAGCATGTGAAATGGCCCAGTGGTAAGAGATTCGAGGACAAATTTGTGGAAACCCTAAAGAAATACGGATACAAGGGTTCATATTTGTCAAAGGAATGGATGAAACAGCCCGTGTTTATACAGTCCTTCGCCCCAACATCGCTTATTTACATATCAAACCAGACGGACCTACCCAAAATCTTCCTAATCGATGATGTGGATATTCCATGTCAGGATACAAATCAGACATATTGGGAAATTACTTCGGATAGTTACCTAGACTTCATCAAGGATTATGTGGTGGGGATTGGACCTTGGAAGGATACTATTGTTCCTGTATCCAACAATTATCTGCAACCAGCTACTGATCTTGTTGCCAGAGCACATGCTCGTAACTTACAGGTACACCCGTACACTTACAGGAACGAGAACCAGTTCCTCCATTTTAACTTCAGTGTAGACCCGTACATGGAATTCGATTACTGGATAAACATGGTAGGGGTTGATGGACTCTTTACAGATTTTACAGGCAGCCTCCATAATTACCAGGAATGGACCTCCCCAAATGAAGATGCATATACACTTTTGCATAAGATTGCTTCAATGATCTCAAAGTACAGAAGAGCATGA

Network for GWHGAAZE017738

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03009.18	GDPD	159	441	4.00E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01126	E3.1.4.46, glpQ, ugpQ	Glycerophospholipid metabolism	map00564

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process
GO:0008081	molecular_function	phosphoric diester hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	42.531
	SRR3591706	second leaf	22.597
	SRR3591707	mature leaf	18.257
	SRR3591708	Shoot apex	24.936
	SRR3591709	Stem	77.622
	SRR3591710	White floral bud	38.980
	SRR3591711	White flower	27.975
	SRR3591712	Green floral bud	45.200
	SRR3591713	Yellow flower	39.548
SRP173429	SRR8316895	Juvenile bud stage	22.711
	SRR8316896	Juvenile bud stage	38.581
	SRR8316897	Juvenile bud stage	15.556
	SRR8316894	Third green stage	16.103
	SRR8316900	Third green stage	43.547
	SRR8316901	Third green stage	44.994
	SRR8316898	Complete white stage	21.970
	SRR8316899	Complete white stage	45.812
	SRR8316903	Complete white stage	30.858
	SRR8316902	Silver flowering stage	20.186
	SRR8316904	Silver flowering stage	32.948
	SRR8316905	Silver flowering stage	15.011
	SRR8316906	Gold flowering stage	22.610
	SRR8316907	Gold flowering stage	32.513
	SRR8316908	Gold flowering stage	34.442
SRP132670	SRR6706286	Control	24.048
	SRR6706287	Light intensity 50%	23.193
	SRR6706288	Light intensity 20%	22.172
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.571
	CNS0095593	Slightly white alabastrum(diploid) 2	29.320
	CNS0095594	Slightly white alabastrum(diploid) 3	38.843
	CNS0095595	Whole white alabastrum(diploid) 2	35.184
	CNS0095596	Whole white alabastrum(diploid) 3	37.806
	CNS0095597	Whole white alabastrum(diploid) 4	30.930
	CNS0095598	Silvery flower (diploied) 1	15.585
	CNS0095599	Silvery flower (diploied) 2	14.725
	CNS0095600	Silvery flower (diploied) 3	23.548
	CNS0095601	Golden flower (diploid) 1	15.661
	CNS0095602	Golden flower (diploid) 2	22.581
	CNS0095603	Golden flower (diploid) 3	21.137
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.951
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.183
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.747
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.440
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.435
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.809
	CNS0095610	Silvery flower (tetraploid) 1	20.334
	CNS0095611	Silvery flower (tetraploid) 2	26.895
	CNS0095612	Silvery flower (tetraploid) 3	24.158
	CNS0095613	Golden flower (tetraploid) 1	10.625
	CNS0095614	Golden flower (tetraploid) 2	16.491
	CNS0095615	Golden flower (tetraploid) 3	18.172
CRA001975	CRR073297	Stem 1	27.238
	CRR073298	Stem 2	27.016
	CRR073299	Stem 3	26.112
	CRR073300	Leaf 1	30.161
	CRR073301	Leaf 2	29.106
	CRR073302	Leaf 3	32.602
	CRR073303	Juvenile bud 1	32.044
	CRR073304	Juvenile bud 2	36.564
	CRR073305	Juvenile bud 3	35.397
	CRR073306	Third green 1	11.067
	CRR073307	Third green 2	12.389
	CRR073308	Third green 3	11.382
	CRR073309	Second white 1	10.073
	CRR073310	Second white 2	7.225
	CRR073311	Second white 3	7.450
	CRR073312	Silver flowering 1	7.944
	CRR073313	Silver flowering 2	8.515
	CRR073314	Silver flowering 3	7.260
	CRR073315	Gold flowering 1	46.852
	CRR073316	Gold flowering 2	62.046
	CRR073317	Gold flowering 3	57.425
	CRR073318	Tawny withering 1	24.892
	CRR073319	Tawny withering 2	27.172
	CRR073320	Tawny withering 3	18.108