Gene detail

Detail information of GWHGAAZE017726

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002277300.1	2.1235E-135	PREDICTED: zinc finger CCCH domain-containing protein 67 [Vitis vinifera]
Swissprot	tr\|Q9STM4\|C3H43_ARATH	6E-99	Zinc finger CCCH domain-containing protein 43
trEMBL	tr\|D7SHC4\|D7SHC4_VITVI	8E-136	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI14883.3}
TAIR10	AT3G48440.1	3E-82	Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	10092872	10095196	-
GWHAAZE00000005	mRNA	10092872	10095196	-
GWHAAZE00000005	exon	10092872	10093030	-
GWHAAZE00000005	exon	10093594	10093878	-
GWHAAZE00000005	exon	10094117	10094395	-
GWHAAZE00000005	exon	10094567	10094686	-
GWHAAZE00000005	exon	10095161	10095196	-
GWHAAZE00000005	CDS	10095161	10095196	-
GWHAAZE00000005	CDS	10094567	10094686	-
GWHAAZE00000005	CDS	10094117	10094395	-
GWHAAZE00000005	CDS	10093594	10093878	-
GWHAAZE00000005	CDS	10092872	10093030	-

Transcript Sequence
>GWHTAAZE017746 ATGCTTTTGTTCCTTTGCCTTCTTGGGAATCCACAGTATTACCTGACATCAGGAGGATGCAAGTACGGAAAAGCTTGTAAATACAATCACAGCATGGGAAAGCCTGCTGTAGCACCAATAGTGGAGTTTAACTTTCTGGGATTGCCAATCCGACCGGGAGAGAGAGAGTGCCCTTATTACATGCGCACTGGTTCCTGCAAGTATGGATCAAACTGCAGGTTTAATCATCCCGATCCTACGGCAGCGGGGGGAGGAGGTGACACTCCTTCCAGATATGGTAATGGTGGATCCATTTCATTACAAAGTCTTCCACAAACGACTATGCCATCTTGGTCGTCACCAAGACCGATGAATGAGACCACCACCTTTGTGCCAGTGATGTATCACCAAACACAAGGCCTTCCTCCTCCAAATCCTGACTGGAACAGTTATCAGGCTCCTCCTGCATACCATCAACCATCAGAAACGGGCCTACCTACACCGCCAGCATTTGCCATGAACAATCCAGCAACTGATACCTCCAGTTTCTACCCACCTCATCATCAACGGCAGATGCGGGTTGAAGAATATCCTGAACGACCAGGCGAGCCTGAATGCACCTACTTTTTGAAAACTGGTGACTGTAAATACAGGTCTAACTGCAAATTTCACCATCCCAAGACCCGGATCCCCAAAACACCCCCATGTATTCTCAGCGACAAAGGCTTACCTCTAAGACCAGGTCAAAACACGTGTACGCATTACAGCAGATATGGGATTTGCAAGTTTGGGCCGGCTTGTAAATATGACCATCCAGTAAATTATAGCAACTCAACTTGGTCCGAACAGGATGAGCCGCCTCCTTTCGGCAACTCGGCAACTGCAGATGGGCTGCAATGA

Network for GWHGAAZE017726

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.25	zf-CCCH	13	31	4.00E-05
PF00642.25	zf-CCCH	53	77	2.20E-11
PF00642.25	zf-CCCH	195	220	4.00E-07
PF00642.25	zf-CCCH	242	265	1.20E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	78.342
	SRR3591706	second leaf	35.013
	SRR3591707	mature leaf	33.260
	SRR3591708	Shoot apex	74.428
	SRR3591709	Stem	70.364
	SRR3591710	White floral bud	58.171
	SRR3591711	White flower	62.338
	SRR3591712	Green floral bud	56.043
	SRR3591713	Yellow flower	45.444
SRP173429	SRR8316895	Juvenile bud stage	42.180
	SRR8316896	Juvenile bud stage	51.640
	SRR8316897	Juvenile bud stage	31.181
	SRR8316894	Third green stage	17.600
	SRR8316900	Third green stage	41.787
	SRR8316901	Third green stage	45.594
	SRR8316898	Complete white stage	18.429
	SRR8316899	Complete white stage	65.207
	SRR8316903	Complete white stage	26.589
	SRR8316902	Silver flowering stage	18.908
	SRR8316904	Silver flowering stage	19.667
	SRR8316905	Silver flowering stage	10.883
	SRR8316906	Gold flowering stage	28.463
	SRR8316907	Gold flowering stage	32.527
	SRR8316908	Gold flowering stage	31.110
SRP132670	SRR6706286	Control	68.919
	SRR6706287	Light intensity 50%	60.069
	SRR6706288	Light intensity 20%	57.178
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	54.283
	CNS0095593	Slightly white alabastrum(diploid) 2	66.046
	CNS0095594	Slightly white alabastrum(diploid) 3	45.323
	CNS0095595	Whole white alabastrum(diploid) 2	45.041
	CNS0095596	Whole white alabastrum(diploid) 3	34.282
	CNS0095597	Whole white alabastrum(diploid) 4	35.885
	CNS0095598	Silvery flower (diploied) 1	51.615
	CNS0095599	Silvery flower (diploied) 2	47.391
	CNS0095600	Silvery flower (diploied) 3	41.945
	CNS0095601	Golden flower (diploid) 1	55.803
	CNS0095602	Golden flower (diploid) 2	56.465
	CNS0095603	Golden flower (diploid) 3	55.356
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.148
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.994
	CNS0095606	Slightly white alabastrum(tetraploid) 3	39.234
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.756
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.277
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.348
	CNS0095610	Silvery flower (tetraploid) 1	28.938
	CNS0095611	Silvery flower (tetraploid) 2	35.381
	CNS0095612	Silvery flower (tetraploid) 3	21.134
	CNS0095613	Golden flower (tetraploid) 1	19.228
	CNS0095614	Golden flower (tetraploid) 2	26.838
	CNS0095615	Golden flower (tetraploid) 3	21.242
CRA001975	CRR073297	Stem 1	74.534
	CRR073298	Stem 2	67.611
	CRR073299	Stem 3	64.483
	CRR073300	Leaf 1	70.625
	CRR073301	Leaf 2	81.498
	CRR073302	Leaf 3	61.540
	CRR073303	Juvenile bud 1	62.953
	CRR073304	Juvenile bud 2	51.118
	CRR073305	Juvenile bud 3	75.847
	CRR073306	Third green 1	36.841
	CRR073307	Third green 2	27.731
	CRR073308	Third green 3	35.029
	CRR073309	Second white 1	11.750
	CRR073310	Second white 2	14.736
	CRR073311	Second white 3	11.191
	CRR073312	Silver flowering 1	8.823
	CRR073313	Silver flowering 2	6.116
	CRR073314	Silver flowering 3	9.779
	CRR073315	Gold flowering 1	16.606
	CRR073316	Gold flowering 2	24.359
	CRR073317	Gold flowering 3	13.804
	CRR073318	Tawny withering 1	69.978
	CRR073319	Tawny withering 2	80.554
	CRR073320	Tawny withering 3	55.635