Gene detail

Detail information of GWHGAAZE017720

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009763478.1	0	PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Nicotiana sylvestris]
trEMBL	tr\|K4BJZ9\|K4BJZ9_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc03g111360.2.1}
TAIR10	AT5G63290.1	7E-168	Radical SAM superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	10029472	10030970	+
GWHAAZE00000005	mRNA	10029472	10030970	+
GWHAAZE00000005	exon	10029472	10030253	+
GWHAAZE00000005	exon	10030343	10030970	+
GWHAAZE00000005	CDS	10029472	10030253	+
GWHAAZE00000005	CDS	10030343	10030970	+

Transcript Sequence
>GWHTAAZE017740 ATGCTAAAGGCGACGTGCAATCCTATTTTGACAAACATTCCCACCAGATTCAAGCTTCCAAACCTTTCTCTCCCCATATCCAGCGCCCTCGCACAATCCCCACCACCTGTTCGACAAATTGCCTTACCCACAACCCCTCCCCACAAACTCCCTCCAACTTCAGCCTACGTCCATCTCCCTTTCTGCCGTAAACGCTGCCACTACTGCGACTTCCCAATCCTTGCCCTCGGCGCTTCTTCAACCCAAACTGACCATGACCCAAGAATCCTTAACTACATCCAACTCATCTGTAAAGAAATCACCGCAACCCAATTTGAATTCAACCATTACCCACCTCTCAAAACTATCTTCTTTGGAGGTGGTACACCTTCACTTGTCCCTCCTAGGCTGGTTTCTTTGGTTCTCGATACATTGAGTTCGAAATTCGGTTTGTGCTCTGATGCTGAGATATCTATAGAAATGGACCCAGGGACATTTGATGGTAAAAAATTGAAGGAGTTGATGGAGTTGGGTGTGAATAGAGTTTCTTTGGGAGTTCAGGCCTTTCAAGAAGAGTTGTTGAAGGCTTGTGGAAGAGCACATGGTCTTGAGGAGGTTCACCAGGCAATTGACATTGTTAGGTCATGTGGGGTTAAAAATTGGAGTATGGACCTCATATCTTCTCTACCTCATCAAACAACAGAAATGTGGGAAGAGAGTTTGCAGCTCACTATTGAATCACAACCTACCCATGTATCCGTTTACGATTTGCAAGTTGAGCAAGGCACTAAATTTGGAGTACTGTACAAACCAGGGGAGTTTCCTCTGCCTTCTGAGAACCAATCAGCACAATTCTACAAAATGGCTTCAAGGATGCTTGCTGAAGGTGGTTATAACCATTATGAAATCAGTAGTTACAGCAAGAGTGGCTATGAGTGCAAGCACAATCTGACCTACTGGAAGAACAATTCTTTTTACGGTTTTGGCCTTGGTTCTGCCAGTTATGTTAGCGGAGTAAGGTATTCAAGGCCAAAGAAACTTAAAGAGTATGCAGGCTATGTTCAAGATTTGGAGAATGGAGTGGTAAACTGCTGTGAAGAGAGTCTTTTTGATGCCAAGGACACAGCCTCGGATGTTCTGATGCTCTCTCTAAGAACTGCAAGAGGCTTAGATTTGAAGTCTTTTGGGGAAGCTTTTGGTGGCTTACTTCTTGTCTCCCTTTGTGAACTCTATAAACCTTATATGGAAAGTGGGCACGTGGTCTACTTGGATGAGAGGAGGAGAAATATCACGGCAGATGAATTCAACTCGGGGGTATATGACAAGCACAAAATGGAAGAGGTGGTGGCATTTATCCGGCTTAGTGATCCAGATGGTTTCTTACTATCCAATGAACTGATATCCCTTGCGTTTGGCCTCATATCTCCATGA

Network for GWHGAAZE017720

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04055.22	Radical_SAM	57	236	1.20E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006779	biological_process	porphyrin-containing compound biosynthetic process
GO:0005737	cellular_component	cytoplasm
GO:0003824	molecular_function	catalytic activity
GO:0051536	molecular_function	iron-sulfur cluster binding
GO:0004109	molecular_function	coproporphyrinogen oxidase activity
GO:0051539	molecular_function	4 iron, 4 sulfur cluster binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.567
	SRR3591706	second leaf	1.465
	SRR3591707	mature leaf	2.838
	SRR3591708	Shoot apex	3.883
	SRR3591709	Stem	4.238
	SRR3591710	White floral bud	3.211
	SRR3591711	White flower	7.564
	SRR3591712	Green floral bud	4.706
	SRR3591713	Yellow flower	6.914
SRP173429	SRR8316895	Juvenile bud stage	2.192
	SRR8316896	Juvenile bud stage	3.797
	SRR8316897	Juvenile bud stage	1.327
	SRR8316894	Third green stage	1.605
	SRR8316900	Third green stage	5.959
	SRR8316901	Third green stage	4.168
	SRR8316898	Complete white stage	1.218
	SRR8316899	Complete white stage	3.952
	SRR8316903	Complete white stage	2.529
	SRR8316902	Silver flowering stage	1.506
	SRR8316904	Silver flowering stage	2.466
	SRR8316905	Silver flowering stage	0.693
	SRR8316906	Gold flowering stage	4.360
	SRR8316907	Gold flowering stage	3.626
	SRR8316908	Gold flowering stage	5.390
SRP132670	SRR6706286	Control	2.984
	SRR6706287	Light intensity 50%	2.692
	SRR6706288	Light intensity 20%	2.571
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.617
	CNS0095593	Slightly white alabastrum(diploid) 2	2.320
	CNS0095594	Slightly white alabastrum(diploid) 3	2.077
	CNS0095595	Whole white alabastrum(diploid) 2	2.804
	CNS0095596	Whole white alabastrum(diploid) 3	2.272
	CNS0095597	Whole white alabastrum(diploid) 4	1.903
	CNS0095598	Silvery flower (diploied) 1	3.901
	CNS0095599	Silvery flower (diploied) 2	4.682
	CNS0095600	Silvery flower (diploied) 3	8.800
	CNS0095601	Golden flower (diploid) 1	3.367
	CNS0095602	Golden flower (diploid) 2	6.793
	CNS0095603	Golden flower (diploid) 3	8.385
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.336
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.492
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.660
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.294
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.287
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.421
	CNS0095610	Silvery flower (tetraploid) 1	9.337
	CNS0095611	Silvery flower (tetraploid) 2	13.182
	CNS0095612	Silvery flower (tetraploid) 3	10.430
	CNS0095613	Golden flower (tetraploid) 1	4.144
	CNS0095614	Golden flower (tetraploid) 2	8.062
	CNS0095615	Golden flower (tetraploid) 3	7.566
CRA001975	CRR073297	Stem 1	6.470
	CRR073298	Stem 2	8.070
	CRR073299	Stem 3	5.905
	CRR073300	Leaf 1	4.921
	CRR073301	Leaf 2	4.546
	CRR073302	Leaf 3	3.007
	CRR073303	Juvenile bud 1	5.027
	CRR073304	Juvenile bud 2	5.480
	CRR073305	Juvenile bud 3	7.911
	CRR073306	Third green 1	1.724
	CRR073307	Third green 2	1.191
	CRR073308	Third green 3	1.926
	CRR073309	Second white 1	4.779
	CRR073310	Second white 2	5.288
	CRR073311	Second white 3	4.818
	CRR073312	Silver flowering 1	4.581
	CRR073313	Silver flowering 2	3.106
	CRR073314	Silver flowering 3	3.537
	CRR073315	Gold flowering 1	9.612
	CRR073316	Gold flowering 2	21.053
	CRR073317	Gold flowering 3	15.677
	CRR073318	Tawny withering 1	3.200
	CRR073319	Tawny withering 2	3.792
	CRR073320	Tawny withering 3	3.374