Gene detail

Detail information of GWHGAAZE017649

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008459895.1	0	PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [Cucumis melo]
Swissprot	tr\|Q6Z1G7\|ODPB1_ORYSJ	0	Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial (Precursor)
trEMBL	tr\|A0A0A0KF95\|A0A0A0KF95_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN46426.1}
TAIR10	AT5G50850.1	4E-170	Transketolase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	9166650	9169981	-
GWHAAZE00000005	mRNA	9166650	9169981	-
GWHAAZE00000005	exon	9169943	9169981	-
GWHAAZE00000005	exon	9169786	9169845	-
GWHAAZE00000005	exon	9169574	9169654	-
GWHAAZE00000005	exon	9169441	9169467	-
GWHAAZE00000005	exon	9169281	9169343	-
GWHAAZE00000005	exon	9168953	9169039	-
GWHAAZE00000005	exon	9168239	9168364	-
GWHAAZE00000005	exon	9167799	9167932	-
GWHAAZE00000005	exon	9167653	9167725	-
GWHAAZE00000005	exon	9167486	9167551	-
GWHAAZE00000005	exon	9167332	9167370	-
GWHAAZE00000005	exon	9167103	9167227	-
GWHAAZE00000005	exon	9166858	9166972	-
GWHAAZE00000005	exon	9166650	9166700	-
GWHAAZE00000005	CDS	9169943	9169981	-
GWHAAZE00000005	CDS	9169786	9169845	-
GWHAAZE00000005	CDS	9169574	9169654	-
GWHAAZE00000005	CDS	9169441	9169467	-
GWHAAZE00000005	CDS	9169281	9169343	-
GWHAAZE00000005	CDS	9168953	9169039	-
GWHAAZE00000005	CDS	9168239	9168364	-
GWHAAZE00000005	CDS	9167799	9167932	-
GWHAAZE00000005	CDS	9167653	9167725	-
GWHAAZE00000005	CDS	9167486	9167551	-
GWHAAZE00000005	CDS	9167332	9167370	-
GWHAAZE00000005	CDS	9167103	9167227	-
GWHAAZE00000005	CDS	9166858	9166972	-
GWHAAZE00000005	CDS	9166650	9166700	-

Transcript Sequence
>GWHTAAZE017669 ATGTGGGGAATCGTAAGACGGAGATTCATTTCCAATTTGAGGACTCAAATCCAATCTGTATTCTATGCCTCCAGGTTTTACTCTTCTTCAGCAAAACAGATGACGGTGCGGGATGCTTTGAATTCTGCACTTGATGAAGAAATGGCTGCAGATCCTAAAGTATTTTTAATGGGTGAAGAGGCTGGTGAATATCAAGGTGCATACAAGATTACGAGAGGTCTCCTCGACAAGTATGGTCCAGATAGGGTTGTTGATACTCCCATTACTGAGGCCGGCTTCACTGGGATTGCCGTTGGTGCTGCATACCACAGTCTGAAGCCCGTTGTAGAATTTATGACGATTAACTTTGCAATGCAGGCAATTGACCACATCATTAATTCTGCTGCAAAATCGAACTACATGTCTGCTAGTCAGATATCTGTACCCATTGTTTTCAGAGGTCCAAATGGTGCTGCTGCTGGAGTTGGTGCACAACATTCCCAGTGCTATGCACCATGGTATGGTTCATGTCCTGGGCTGAAGGTGCTGGTTCCATACTCGTCGGAAGATGCTCGTGGCCTTCTAAAAGCTGCTATAAGGGACCCAGACCCCGTTGTTTTCCTTGAAAATGAGTTGTTATATGGTGAGTCCTTCCCTGTTTCAGCAGCAGTTCTTGATTCTAGTTTCTGTCTTCCAATAGGGAAAGCTAAGACTGAACGTGAAGGGAAGGACGTGACAATAACTGCGTTCTCAAAGATGGTTGGCCTTGCACTTGAGGCAGCTAAGATTCTCGAGAAAGATGGAATTAGTGCTGAGGTTATAAATTTGCGTTCTATTCGTCCCCTTGATAGAGCTGCAATTAATACTTCGGTCAGAAAAACCAACAGGCTTGTAACTGTTGAAGAAGGGTTCCCGCAGCATGGTGTTGGTGCTGAGATCTGTACATCAGTGATTGAGGACAGCTTCGAGTATCTTGATGCAGCTATTGAGAGGATTGCAGGGGCTGATGTTTGCATGCCATATGCTGCAAACCTTGAAAGGATGGCTGTCCCACAGGTAGAGGATATTGTTCGTGCAGCAAAGAGGACCTGCTACATATCAGTTTGA

Network for GWHGAAZE017649

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02779.25	Transket_pyr	33	208	1.30E-44
PF02780.21	Transketolase_C	227	349	7.00E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00162	PDHB, pdhB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Glycolysis / Gluconeogenesis	map00010
		Citrate cycle	map00020
		Pyruvate metabolism	map00620
		HIF-1 signaling pathway	map04066
		Glucagon signaling pathway	map04922

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.025
	SRR3591706	second leaf	1.223
	SRR3591707	mature leaf	2.356
	SRR3591708	Shoot apex	1.119
	SRR3591709	Stem	2.101
	SRR3591710	White floral bud	5.975
	SRR3591711	White flower	1.613
	SRR3591712	Green floral bud	24.730
	SRR3591713	Yellow flower	0.390
SRP173429	SRR8316895	Juvenile bud stage	12.812
	SRR8316896	Juvenile bud stage	35.404
	SRR8316897	Juvenile bud stage	10.808
	SRR8316894	Third green stage	10.223
	SRR8316900	Third green stage	30.856
	SRR8316901	Third green stage	35.616
	SRR8316898	Complete white stage	0.631
	SRR8316899	Complete white stage	0.469
	SRR8316903	Complete white stage	1.032
	SRR8316902	Silver flowering stage	2.075
	SRR8316904	Silver flowering stage	2.274
	SRR8316905	Silver flowering stage	0.971
	SRR8316906	Gold flowering stage	2.715
	SRR8316907	Gold flowering stage	3.192
	SRR8316908	Gold flowering stage	3.301
SRP132670	SRR6706286	Control	7.940
	SRR6706287	Light intensity 50%	8.145
	SRR6706288	Light intensity 20%	7.081
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.417
	CNS0095593	Slightly white alabastrum(diploid) 2	19.001
	CNS0095594	Slightly white alabastrum(diploid) 3	38.416
	CNS0095595	Whole white alabastrum(diploid) 2	29.932
	CNS0095596	Whole white alabastrum(diploid) 3	40.917
	CNS0095597	Whole white alabastrum(diploid) 4	30.698
	CNS0095598	Silvery flower (diploied) 1	1.201
	CNS0095599	Silvery flower (diploied) 2	2.031
	CNS0095600	Silvery flower (diploied) 3	0.894
	CNS0095601	Golden flower (diploid) 1	1.920
	CNS0095602	Golden flower (diploid) 2	0.604
	CNS0095603	Golden flower (diploid) 3	0.531
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.042
	CNS0095605	Slightly white alabastrum(tetraploid) 2	34.420
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.404
	CNS0095607	Whole white alabastrum(tetraploid) 1	40.363
	CNS0095608	Whole white alabastrum(tetraploid) 2	43.094
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.944
	CNS0095610	Silvery flower (tetraploid) 1	5.934
	CNS0095611	Silvery flower (tetraploid) 2	7.774
	CNS0095612	Silvery flower (tetraploid) 3	10.906
	CNS0095613	Golden flower (tetraploid) 1	2.323
	CNS0095614	Golden flower (tetraploid) 2	4.521
	CNS0095615	Golden flower (tetraploid) 3	1.132
CRA001975	CRR073297	Stem 1	14.969
	CRR073298	Stem 2	12.901
	CRR073299	Stem 3	8.086
	CRR073300	Leaf 1	15.823
	CRR073301	Leaf 2	15.100
	CRR073302	Leaf 3	16.715
	CRR073303	Juvenile bud 1	14.336
	CRR073304	Juvenile bud 2	13.068
	CRR073305	Juvenile bud 3	0.501
	CRR073306	Third green 1	4.477
	CRR073307	Third green 2	5.722
	CRR073308	Third green 3	2.899
	CRR073309	Second white 1	2.719
	CRR073310	Second white 2	1.503
	CRR073311	Second white 3	1.780
	CRR073312	Silver flowering 1	2.199
	CRR073313	Silver flowering 2	2.704
	CRR073314	Silver flowering 3	1.546
	CRR073315	Gold flowering 1	1.267
	CRR073316	Gold flowering 2	0.349
	CRR073317	Gold flowering 3	1.485
	CRR073318	Tawny withering 1	1.893
	CRR073319	Tawny withering 2	2.292
	CRR073320	Tawny withering 3	1.490