Gene detail

Detail information of GWHGAAZE017648

Functional Annotation

Database	Orthologs	Annotation
Nr	CDO98674.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9ZVM9\|Y1461_ARATH	Probable serine/threonine-protein kinase At1g54610
trEMBL	tr\|A0A068TRX4\|A0A068TRX4_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO98674.1}
TAIR10	AT5G50860.1	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	9161682	9165755	+
GWHAAZE00000005	mRNA	9161682	9165755	+
GWHAAZE00000005	exon	9161682	9161990	+
GWHAAZE00000005	exon	9162107	9162391	+
GWHAAZE00000005	exon	9163290	9163607	+
GWHAAZE00000005	exon	9164171	9164398	+
GWHAAZE00000005	exon	9164739	9164839	+
GWHAAZE00000005	exon	9164938	9165061	+
GWHAAZE00000005	exon	9165387	9165755	+
GWHAAZE00000005	CDS	9161682	9161990	+
GWHAAZE00000005	CDS	9162107	9162391	+
GWHAAZE00000005	CDS	9163290	9163607	+
GWHAAZE00000005	CDS	9164171	9164398	+
GWHAAZE00000005	CDS	9164739	9164839	+
GWHAAZE00000005	CDS	9164938	9165061	+
GWHAAZE00000005	CDS	9165387	9165755	+

Transcript Sequence
>GWHTAAZE017668 ATGGGTTGCGTTCTCGGTACAAGCGCCGCCGGAGAAAGCAACCGCCGGAGATCCCGCAGGCCTCCGGATACTCGACGGACTGTCGAACAGATACCTCCGGACGCCGTTACTGACGGAGTTAGGGTTAGTAAGGATGGAGACGGAGACGGAGATGGAGAGAAGATCCCGCACACCGACCGCCGTAGCCCGGTGCCGCAGTATAGCCTTAAGACGACACAAGGATGGCCCGCGTGGTTGTGCGATGTTGCCGGTGATGCCATCAAGGATTGGACCCCTCGCCGCGCCAATACCTTTGAAAAACTCGATAAGATAGGGCAAGGGACGTACAGCAATGTATATAAAGCGAGAGATTTGCTAACAGGGAAGATAGTGGCGTTGAAGAAGGTTAGGTTTGATAATTTAGAGACGGAGAGTGTCAAGTTTATGGCTAGAGAGATACTTGTGTTGAAAAAGCTTAATCATCCCAATGTAATTAAGCTTGAAGGTTTGGTCACTTCAAGAATGTCTTGTAGCCTTTACCTTGTATTCGAGTACATGGAACACGATCTCTCCGGCCTTGCCGCCGTCCAGGGCGTCAAATTCACTGAGCCACAGGTTAAATGCTTTATGAAGCAATTACTGTCAGGGCTCGAGCATTGCCACAACAATGGTGTGCTGCACCGTGATATCAAGGGTTCCAATTTGCTTATTGATAATGAAGGAACTCTGAAAATAGCAGATTTTGGACTAGCTTCCTTCTATGATCCAAAACACAAGCAACCCATGACTAGTCGGGTTGTCACCCTTTGGTACCGCCCCCCAGAGCTTCTTCTTGGAGCCGTTTATTATGGTGTTGGAGTTGACCTTTGGAGTGCTGGCTGCATTCTGGCGGAGTTACTTTATGGGAAACCAATAATGCCTGGCCGAACAGAGGTTGAGCAATTGCACAAGATATTCAAGTTATGTGGCTCTCCAACTGAGGAATATTGGAAAAAATCTCGGCTGCCGAATGCAACCCTTTTCAAGCCGCAGCAGCCATACAAGCGTTGCATATTGGAAACATTCAAGGATTTTCCTCCTTCTTCTCTCCCTTTGGTTGAAACCCTTCTTGCAATCAACCCCGAAGACCGAGGCTCTGCCACTGAAGCTCTAAATAGCCAATTCTTCAGCACTGAACCTTATGCTTGTGAGCCATCAAGTTTACCAAAATATCCTCCGAGCAAAGAATTAGATGTGAAATTGAGAGATGAAGAAGCCAGAAGGCAAAGAGGTTTGACTGGGAAAGCTCACGTTGTAGACGGCACCAGAAGAGTGAGAGGCCGTGATCGGGTAAGCCGTGCAGTTCCCGCACCAGAAGCCAATGCAGAGATCCAAACTAACTTGGACAGGTGGAGAGTTGTGTCACAAGCTAACGGTAAGAGTAAAAGTGAGAAATTCCCACCTCCACACCAAGATGCAGCAGTGGGATACCCTCAGGATACATCACATAATGGGCCCGGTCCCCTATCATTTGGTGCTGCCAACCCTTCATTTAGCTCATCGATTTTCGATCCAAGGTCGTCGCGGTCTGTTAAAGAAACCGCAGTCACCGGTGGTGGACCTTCCACAAGGAGAAAAGGCAAGAAACAACAGCACCAAATGGCTCCATCTCGCAAGTTTATTCGTGCATTCTTTCCGTCATCAATTAATCTATCAATGGATCTAAGATTCAAGGGTAAAGGATCTGTTTCTGAGGTTTTTGCCAGCCGAAGGTAG

Network for GWHGAAZE017648

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	98	382	5.50E-69

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-CRK7-CDK9

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.262
	SRR3591706	second leaf	27.427
	SRR3591707	mature leaf	22.733
	SRR3591708	Shoot apex	29.459
	SRR3591709	Stem	22.856
	SRR3591710	White floral bud	21.746
	SRR3591711	White flower	9.992
	SRR3591712	Green floral bud	23.265
	SRR3591713	Yellow flower	6.130
SRP173429	SRR8316895	Juvenile bud stage	15.907
	SRR8316896	Juvenile bud stage	18.033
	SRR8316897	Juvenile bud stage	7.569
	SRR8316894	Third green stage	7.213
	SRR8316900	Third green stage	20.504
	SRR8316901	Third green stage	19.598
	SRR8316898	Complete white stage	7.073
	SRR8316899	Complete white stage	24.224
	SRR8316903	Complete white stage	9.551
	SRR8316902	Silver flowering stage	3.564
	SRR8316904	Silver flowering stage	5.988
	SRR8316905	Silver flowering stage	2.419
	SRR8316906	Gold flowering stage	5.682
	SRR8316907	Gold flowering stage	6.400
	SRR8316908	Gold flowering stage	13.146
SRP132670	SRR6706286	Control	17.941
	SRR6706287	Light intensity 50%	17.167
	SRR6706288	Light intensity 20%	18.074
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.585
	CNS0095593	Slightly white alabastrum(diploid) 2	11.008
	CNS0095594	Slightly white alabastrum(diploid) 3	12.147
	CNS0095595	Whole white alabastrum(diploid) 2	10.993
	CNS0095596	Whole white alabastrum(diploid) 3	7.547
	CNS0095597	Whole white alabastrum(diploid) 4	9.789
	CNS0095598	Silvery flower (diploied) 1	15.848
	CNS0095599	Silvery flower (diploied) 2	11.403
	CNS0095600	Silvery flower (diploied) 3	11.537
	CNS0095601	Golden flower (diploid) 1	11.593
	CNS0095602	Golden flower (diploid) 2	15.825
	CNS0095603	Golden flower (diploid) 3	14.721
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.224
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.904
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.405
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.506
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.372
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.455
	CNS0095610	Silvery flower (tetraploid) 1	9.610
	CNS0095611	Silvery flower (tetraploid) 2	11.039
	CNS0095612	Silvery flower (tetraploid) 3	9.251
	CNS0095613	Golden flower (tetraploid) 1	3.468
	CNS0095614	Golden flower (tetraploid) 2	6.638
	CNS0095615	Golden flower (tetraploid) 3	2.594
CRA001975	CRR073297	Stem 1	30.200
	CRR073298	Stem 2	30.027
	CRR073299	Stem 3	27.081
	CRR073300	Leaf 1	27.123
	CRR073301	Leaf 2	28.032
	CRR073302	Leaf 3	24.135
	CRR073303	Juvenile bud 1	17.285
	CRR073304	Juvenile bud 2	12.869
	CRR073305	Juvenile bud 3	22.214
	CRR073306	Third green 1	5.983
	CRR073307	Third green 2	5.651
	CRR073308	Third green 3	8.856
	CRR073309	Second white 1	4.155
	CRR073310	Second white 2	4.592
	CRR073311	Second white 3	2.178
	CRR073312	Silver flowering 1	2.563
	CRR073313	Silver flowering 2	3.212
	CRR073314	Silver flowering 3	2.577
	CRR073315	Gold flowering 1	35.641
	CRR073316	Gold flowering 2	47.313
	CRR073317	Gold flowering 3	37.299
	CRR073318	Tawny withering 1	45.624
	CRR073319	Tawny withering 2	36.033
	CRR073320	Tawny withering 3	42.746