Gene detail

Detail information of GWHGAAZE017638

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007038100.1	3.27521E-83	Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 [Theobroma cacao]
Swissprot	tr\|Q93W88\|BH137_ARATH	6E-52	Transcription factor bHLH137
trEMBL	tr\|A0A061G091\|A0A061G091_THECC	1E-83	Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 {ECO:0000313\|EMBL:EOY22602.1}
TAIR10	AT5G50915.2	5E-41	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	9033848	9035886	+
GWHAAZE00000005	mRNA	9033848	9035886	+
GWHAAZE00000005	exon	9033848	9034222	+
GWHAAZE00000005	exon	9034323	9034493	+
GWHAAZE00000005	exon	9034612	9034677	+
GWHAAZE00000005	exon	9034929	9034997	+
GWHAAZE00000005	exon	9035108	9035194	+
GWHAAZE00000005	exon	9035794	9035886	+
GWHAAZE00000005	CDS	9033848	9034222	+
GWHAAZE00000005	CDS	9034323	9034493	+
GWHAAZE00000005	CDS	9034612	9034677	+
GWHAAZE00000005	CDS	9034929	9034997	+
GWHAAZE00000005	CDS	9035108	9035194	+
GWHAAZE00000005	CDS	9035794	9035886	+

Transcript Sequence
>GWHTAAZE017658 ATGGCAGCCTTTAACCACCCTTTTCTTTTTGACTCTGTTTTCTCTCCAAGGACCACTGCATTTTCCGAGGAACCAAACACCATCTCAAACATCACCACCACTCCATATATTTACAAAAACTACCCAGCTGACCCTCTTCAGAACATATCCCCTGTCGTCAGCAACGTTTATGAAAGCAGCTGCCCAGGAAATAGCAATACAAGAGGTGCTCTTAGCAGTAAAAACGCAGCTTATAAACAGAGCACAGATTCTTCATCGGTGGTAGTTGATAAACTTGAAAGTGATGATCAAGTCACTCAGAATTTAATTCCCATGGAAAAGAAAAGAAAATACAAAGGTGGGTCTTGCACTTCCCCCAATTCTGCTCAATCCAAGGATAAAAGAGAAGTAGTGATCAAAGGGAAGAGACAAAAGAATAAAAGAAAAGATGAGGAGAAAATAAAGAAGAAGAATAAATTAGAAGAAAAAGAAGCAGCTCCAATTGGATACATTCATGTAAGAGCAAGGAGGGGCCAAGCTACTGACAGCCACAGCCTTGCAGAAAGGGTTAGGAGAGAAAAAATTAGCGAGAGAATGAAACTGTTGCAATCTCTCGTTCCAGGGTGTGACAAGGTAACTGGAAAGGCCCTCATGTTGGATGAAATAATTAATTATGTCCAGTCCTTACAAAATCAAGTAGAGTTCCTTTCCGCGAAGCTTGGCAGTGTGAATCCCATGATGTATGACTTTGGACTGGACTTGGATTCTTTCATGGTTAGACCTGATCATAGTAACGGACAATTATTATGGGATGTGGATGGCCAAAGCCAGAGAAATATTATTAGTCAATCTACTGAGTTCAGCAACTTGTGTTTCCATTAA

Network for GWHGAAZE017638

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	176	223	2.00E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.371
	SRR3591706	second leaf	3.801
	SRR3591707	mature leaf	1.561
	SRR3591708	Shoot apex	9.239
	SRR3591709	Stem	24.036
	SRR3591710	White floral bud	8.649
	SRR3591711	White flower	15.270
	SRR3591712	Green floral bud	2.309
	SRR3591713	Yellow flower	0.625
SRP173429	SRR8316895	Juvenile bud stage	1.759
	SRR8316896	Juvenile bud stage	2.734
	SRR8316897	Juvenile bud stage	1.574
	SRR8316894	Third green stage	2.558
	SRR8316900	Third green stage	6.446
	SRR8316901	Third green stage	3.998
	SRR8316898	Complete white stage	7.754
	SRR8316899	Complete white stage	11.010
	SRR8316903	Complete white stage	11.587
	SRR8316902	Silver flowering stage	42.460
	SRR8316904	Silver flowering stage	34.063
	SRR8316905	Silver flowering stage	2.383
	SRR8316906	Gold flowering stage	12.727
	SRR8316907	Gold flowering stage	11.074
	SRR8316908	Gold flowering stage	6.494
SRP132670	SRR6706286	Control	7.368
	SRR6706287	Light intensity 50%	5.634
	SRR6706288	Light intensity 20%	4.062
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.835
	CNS0095593	Slightly white alabastrum(diploid) 2	6.840
	CNS0095594	Slightly white alabastrum(diploid) 3	10.905
	CNS0095595	Whole white alabastrum(diploid) 2	5.780
	CNS0095596	Whole white alabastrum(diploid) 3	6.043
	CNS0095597	Whole white alabastrum(diploid) 4	5.260
	CNS0095598	Silvery flower (diploied) 1	6.855
	CNS0095599	Silvery flower (diploied) 2	6.261
	CNS0095600	Silvery flower (diploied) 3	5.136
	CNS0095601	Golden flower (diploid) 1	3.353
	CNS0095602	Golden flower (diploid) 2	3.146
	CNS0095603	Golden flower (diploid) 3	2.171
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.251
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.067
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.214
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.582
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.721
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.037
	CNS0095610	Silvery flower (tetraploid) 1	5.586
	CNS0095611	Silvery flower (tetraploid) 2	4.066
	CNS0095612	Silvery flower (tetraploid) 3	3.202
	CNS0095613	Golden flower (tetraploid) 1	1.084
	CNS0095614	Golden flower (tetraploid) 2	1.581
	CNS0095615	Golden flower (tetraploid) 3	3.033
CRA001975	CRR073297	Stem 1	13.163
	CRR073298	Stem 2	13.647
	CRR073299	Stem 3	8.805
	CRR073300	Leaf 1	10.955
	CRR073301	Leaf 2	8.975
	CRR073302	Leaf 3	6.345
	CRR073303	Juvenile bud 1	4.313
	CRR073304	Juvenile bud 2	3.564
	CRR073305	Juvenile bud 3	6.734
	CRR073306	Third green 1	5.269
	CRR073307	Third green 2	2.650
	CRR073308	Third green 3	5.697
	CRR073309	Second white 1	0.698
	CRR073310	Second white 2	0.399
	CRR073311	Second white 3	0.014
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	3.265
	CRR073316	Gold flowering 2	3.703
	CRR073317	Gold flowering 3	1.213
	CRR073318	Tawny withering 1	1.490
	CRR073319	Tawny withering 2	2.562
	CRR073320	Tawny withering 3	0.901