Gene detail

Detail information of GWHGAAZE017636

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002284464.1	6.29831E-92	PREDICTED: transcription factor bHLH137 [Vitis vinifera]
Swissprot	tr\|Q93W88\|BH137_ARATH	9E-48	Transcription factor bHLH137
trEMBL	tr\|D7SH59\|D7SH59_VITVI	2E-92	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15739.3}
TAIR10	AT5G50915.2	1E-36	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	8986240	8988387	+
GWHAAZE00000005	mRNA	8986240	8988387	+
GWHAAZE00000005	exon	8986240	8986611	+
GWHAAZE00000005	exon	8986715	8986867	+
GWHAAZE00000005	exon	8986978	8987043	+
GWHAAZE00000005	exon	8987362	8987430	+
GWHAAZE00000005	exon	8987569	8987652	+
GWHAAZE00000005	exon	8987991	8988173	+
GWHAAZE00000005	exon	8988331	8988387	+
GWHAAZE00000005	CDS	8986240	8986611	+
GWHAAZE00000005	CDS	8986715	8986867	+
GWHAAZE00000005	CDS	8986978	8987043	+
GWHAAZE00000005	CDS	8987362	8987430	+
GWHAAZE00000005	CDS	8987569	8987652	+
GWHAAZE00000005	CDS	8987991	8988173	+
GWHAAZE00000005	CDS	8988331	8988387	+

Transcript Sequence
>GWHTAAZE017656 ATGGAAGCCTTTAACCACCCTTTCCATTTAGACTCTGATTTCTCTCCAATGACCACTGAATTTTTTGAGGAACCAAACACCATCTACACCAACACCCCATATTTTTACCAAAATTTCCAACCTGACCGTCTTCAGAATATAATCCCTGACATCAGCAATATTGTTTATGAAAGCAGCTGCCTTGGAAATAGCAACACAACAGGTGCTATTAGTTATAAAAGTGAATCTCATAAACAGAGCATAGATTCTTCATCAGTGGTGGTTGATAAACTTGAAAGTGGTGATCAAGTCACTCAGAATTCAAGTCCCATGGAAAATAAAAGAAAATACAAAAATGGGTCTTCCACTTCCCCCAATTCTTCTCAGTCCAAGGATACAAGAGAAGTAGTGATCAAAGGGAAGAAGCAAAAGAATAAAAGAAAAGATGAGGAGAAAATAAAGAAGAAAGAAGAAGATCCAAAAGGATACATTCATGTAAGGGCAAGGAGAGGCCAAGCCACTGATAGCCACAGCCTTGCAGAGAGGGTTAGGAGAGAGAAAATAAGTGAGAGAATGAAACTGTTGCAGTCTCTTGTTCCCGGATGTGACAAGGTAGTAGGAAAGGCTCTTATTTTAGATCAAATAATCAACTATGTCCGGTCCCTACAAAATCAAGTAGAGTTCCTTTCGGCGAATATTGCTGGTTTGAACCCCATGCCGTATGACTTTGGCCTGGACTTGGATTCTTTCATGGTTAGACCTGAGAGTTTGAGTATCTTGGAGTCGGCAGTGGCAAATGTGCAACAAGCAATTCCCACACAGCTCACAGGCTTTTCTTATAACAATTGTATTTTCACAACTGCTAATAGTAGTGATTATCCTCTTGTGGACACTTCTGCTTCACTTCTACTTCAACAAGCCCAGCTCCCAAATATTATTCTCTCCCAGAGTAATGGACAGCTATTATGGGATGTGGATGGCCAAACCCAAAGAAATATTATTTAG

Network for GWHGAAZE017636

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	169	216	1.50E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.646
	SRR3591706	second leaf	0.036
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.254
	SRR3591709	Stem	0.399
	SRR3591710	White floral bud	3.171
	SRR3591711	White flower	17.231
	SRR3591712	Green floral bud	0.104
	SRR3591713	Yellow flower	0.453
SRP173429	SRR8316895	Juvenile bud stage	0.002
	SRR8316896	Juvenile bud stage	0.021
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.158
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.133
	SRR8316904	Silver flowering stage	0.035
	SRR8316905	Silver flowering stage	0.047
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.143
	SRR8316908	Gold flowering stage	0.328
SRP132670	SRR6706286	Control	0.113
	SRR6706287	Light intensity 50%	0.025
	SRR6706288	Light intensity 20%	0.032
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.997
	CNS0095593	Slightly white alabastrum(diploid) 2	0.103
	CNS0095594	Slightly white alabastrum(diploid) 3	0.043
	CNS0095595	Whole white alabastrum(diploid) 2	0.137
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.361
	CNS0095598	Silvery flower (diploied) 1	1.025
	CNS0095599	Silvery flower (diploied) 2	0.482
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.531
	CNS0095602	Golden flower (diploid) 2	1.025
	CNS0095603	Golden flower (diploid) 3	0.641
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.072
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.257
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.236
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.133
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.133
	CNS0095611	Silvery flower (tetraploid) 2	0.652
	CNS0095612	Silvery flower (tetraploid) 3	0.284
	CNS0095613	Golden flower (tetraploid) 1	0.065
	CNS0095614	Golden flower (tetraploid) 2	2.524
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.065
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.009
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.209
	CRR073309	Second white 1	0.001
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.010
	CRR073318	Tawny withering 1	0.542
	CRR073319	Tawny withering 2	1.207
	CRR073320	Tawny withering 3	0.000