Gene detail

Detail information of GWHGAAZE017628

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002284543.1	PREDICTED: auxin response factor 2 [Vitis vinifera]
Swissprot	tr\|Q94JM3\|ARFB_ARATH	Auxin response factor 2
trEMBL	tr\|D7SH69\|D7SH69_VITVI	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR10	AT5G62000.3	auxin response factor 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	8819851	8827378	+
GWHAAZE00000005	mRNA	8819851	8827378	+
GWHAAZE00000005	exon	8819851	8820252	+
GWHAAZE00000005	exon	8820367	8820482	+
GWHAAZE00000005	exon	8820836	8820931	+
GWHAAZE00000005	exon	8821051	8821107	+
GWHAAZE00000005	exon	8821198	8821353	+
GWHAAZE00000005	exon	8821438	8821522	+
GWHAAZE00000005	exon	8824331	8824421	+
GWHAAZE00000005	exon	8824502	8824666	+
GWHAAZE00000005	exon	8825181	8825300	+
GWHAAZE00000005	exon	8825409	8825484	+
GWHAAZE00000005	exon	8825567	8825738	+
GWHAAZE00000005	exon	8825858	8826762	+
GWHAAZE00000005	exon	8826843	8827033	+
GWHAAZE00000005	exon	8827201	8827378	+
GWHAAZE00000005	five_prime_UTR	8819851	8820122	+
GWHAAZE00000005	CDS	8820123	8820252	+
GWHAAZE00000005	CDS	8820367	8820482	+
GWHAAZE00000005	CDS	8820836	8820931	+
GWHAAZE00000005	CDS	8821051	8821107	+
GWHAAZE00000005	CDS	8821198	8821353	+
GWHAAZE00000005	CDS	8821438	8821522	+
GWHAAZE00000005	CDS	8824331	8824421	+
GWHAAZE00000005	CDS	8824502	8824666	+
GWHAAZE00000005	CDS	8825181	8825300	+
GWHAAZE00000005	CDS	8825409	8825484	+
GWHAAZE00000005	CDS	8825567	8825738	+
GWHAAZE00000005	CDS	8825858	8826762	+
GWHAAZE00000005	CDS	8826843	8827033	+
GWHAAZE00000005	CDS	8827201	8827378	+

Transcript Sequence
>GWHTAAZE017648 AAAAATCAATCCATAAATCATATGTAGAGAGAGAAACTCCGACGTCTGATATGGAGATAGAAAGTGAAAGGTGGTGGTTTAATTGAGAGTGTGAGGGAAAATTTGTTAGCTGATCCAGTTTGGTATAGGGACTAATCACTGTTAATTCAGCGAATTTGTGTAGGTTCAAGTGAATTTGTGGAAATTGAGGGGATTTTAGGTGACTGAAGTGAGGTTTTAGGGTGTTGTTTGTTGAGAGTGGGTTTCAAATGAGAGATCTGTGTTGAGACTCTATGGAAATGGCTTCAGAGATTTCTGGTAAAGTTAACATAAGAGGAGATAGTTTCTCCTCGGGTCACAGTAAAGATGGAGGAGTTTTGGAGACGCAGCAGGGTTATTCGCCGGCATCCGCTGTCGGAAAAGTAGATGCGGAGACGGCGCTTTACACGGAGCTTTGGCGCGCTTGTGCCGGTCCGCTCGTGACTGTTCCTCGTGAAAGAGAGCTTGTGTACTATTTTCCTCAGGGTCACATTGAGCAGGTTGAGGCGTCTACTAATCAGGTGGCGAACCAGCAGATGCCTGTTTATAATCTTCCATCCAAGATCCTCTGCCGTGTGGTTAATGTCCGATTGAAGGCTGAGCCCGACACTGATGAGGTTTTCTCGCAAGTGACTTTGATGCCTGAAGCAAATCAAGATGAGACTGCTGTGAAGAAGGAACCTGTGCCACCTCCTCCACCACGGTTTCATGTTCATTCCTTTTGCAAGACCTTAACTGCGTCTGATACCAGTACCCATGGTGGGTTTTCGGTGCTGAGACGACATGCTGATGAATGCCTCCCCCCACTGGATATGACAAGGCAACCCCCAACCCAAGAGTTGGTGGCCAAGGATTTGCATGGAATTGAGTGGCGCTTCCGACATATCTTTCGGGGTCAACCACGTAGGCACTTACTCCAAAGTGGTTGGAGTGTCTTTGTTAGCTCTAAGAGGCTTGTCGCTGGAGATGCCTTTATATTCCTAAGAGGTGAGAATGGGGAACTTCGTGTTGGAGTAAGACGTGCCCTGAAACAGCAAGCCAACGTTCCATCATCAGTAATTTCAAGTCACAGCATGCATCTTGGTGTCCTTGCAACAGCATGGCATGCCATTCAGACAGGAACCATGTTCACAGTGTACTACAAACCTAGGACTAGCCCTGCGGAGTTCATTGTTCCATTTGATCAGTACATGGAGTCTGTAAAGAACAATTATTCTATTGGGATGAGGTTTAAAATGAGATTTGAAGGTGAAGAAGCTCCAGAGCAGAGGTTTACGGGCACCGTCGTTGGGATTGAAGAAGCTGATCCTAAAAAATGGCCAGAATCTAAGTGGAGATGTCTCAAGGTGCGGTGGGATGAAACTACTAGCATTCCTCGTCCAGATAGAGTTTCGCCCTGGAAAATAGAACCTGCTTTGACACCTCCTGTACTAAACCCACTCCCAGTTCCCAGACCAAAACGGCCCCGATCAAGCATGTTGCCATCATCCCCAGACTCCTCTGTTCTTACGAGGGAAGGTTCATCAAAGGTTGCAGCAGACCCTTTGCCAGCAAGTGCGTTCTCTAGGGTCTTGCAAGGTCAAGAATCATCAATCTTGAGAGGCGCTTTTGCAGAAAGTAACGAGTCAGATTCTTCTGATAAACCGATAGTATGGCCAACTCCAGCAGATGACGATAAGATTGATGTCATTTCTGCTTCTCGAAGATATGGATCAGAGAAGTGGTTGCCCTCTGGGAGGACTGAGGCATCTTTCACCGATCTATTGTCCGGGTTCGGGACCCAATCTAATTCCTCCAATGAGTTCTATACACGTGGAGGTCAAAATACAGTTACGACTAGCACAATGAAAACACAATTACCTGATCAAGAAGGCAAGTTTAGCTTACTTCCAAGCCCATGGTCCGTAATGCCTTCAAATCTCTCACTGAATTTGTTAGATTCGAGTGTGAAAGATTATGTGCAAGGAAGTGACATTCCTTATCATCATGCAAGAGGGGATGTTAGATTTGGTGGTTTCAGAGAGTACCAGCAAGGGAACTGGTTGATGCCTCCTCCACCCCCATCTTATCTTCAGATGGCTCACTCAAGGGAGCTTATGCCGAAACCCTTGTTGGTACAACACCACGAAGCCATAAAAACGAAAGAGAGAAATTGCAAGCTCTTTGGCATACCCCTGGTTACTAATCCTGGTATAGTGGATCCACTGGTGTTGCACAGAGATACAATGCACCCTCACCATTTGCATACACAAGCTGATGCCTTTGAATCTGATCAGCCCTTTGAACAACCGAAGGGTTCAAAAGTCGCAGATAATCCACATGCCAATAACGAACAGGAGAATGTGTCCCACCAAACATATCAGCCACTTGTGAGAGATGGTCATGCTAAAGTCCAGGGGGGTTCAACAAGGAGTTGCACAAAGGTTCATAAGCAGGGGATTGCCCTTGGTAGGTCAGTGGACCTTAGTAAGTTCAACAACTACGATGAATTGATCTCCGAATTGGATCAGTTGTTTGAATTTGGCGGTGAATTGAAGGCTCGCAACAAGAATTGGCTCGTTGTTTATACTGATGATGAGGGTGATATGATGCTCGTTGGAGATGATCCATGGCAGGAATTTTGTGGGATGGTTCGGAAAATCTTTATTTATACAAGAGAGGAGGTTCAGCGAATGAACCCAGGGACGATAAATTGTAAGGGTGAGAGAATTTCCTCAGTTGCAGAAGGCATGGATGCGGAAGAAGCAATGATGAATCTACCACCTTCATCGTCTAATCTGGAGAATTCTTAG

Network for GWHGAAZE017628

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	156	257	3.00E-20
PF06507.14	Auxin_resp	282	364	1.00E-35
PF02309.17	AUX_IAA	708	804	1.60E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009725	biological_process	response to hormone
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	52.236
	SRR3591706	second leaf	59.925
	SRR3591707	mature leaf	96.524
	SRR3591708	Shoot apex	65.445
	SRR3591709	Stem	65.439
	SRR3591710	White floral bud	153.641
	SRR3591711	White flower	137.501
	SRR3591712	Green floral bud	90.176
	SRR3591713	Yellow flower	64.923
SRP173429	SRR8316895	Juvenile bud stage	44.286
	SRR8316896	Juvenile bud stage	48.292
	SRR8316897	Juvenile bud stage	22.193
	SRR8316894	Third green stage	15.307
	SRR8316900	Third green stage	24.296
	SRR8316901	Third green stage	39.503
	SRR8316898	Complete white stage	17.492
	SRR8316899	Complete white stage	78.687
	SRR8316903	Complete white stage	44.244
	SRR8316902	Silver flowering stage	16.699
	SRR8316904	Silver flowering stage	25.102
	SRR8316905	Silver flowering stage	9.462
	SRR8316906	Gold flowering stage	29.343
	SRR8316907	Gold flowering stage	30.371
	SRR8316908	Gold flowering stage	38.696
SRP132670	SRR6706286	Control	38.724
	SRR6706287	Light intensity 50%	43.599
	SRR6706288	Light intensity 20%	43.073
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.843
	CNS0095593	Slightly white alabastrum(diploid) 2	27.972
	CNS0095594	Slightly white alabastrum(diploid) 3	33.440
	CNS0095595	Whole white alabastrum(diploid) 2	21.723
	CNS0095596	Whole white alabastrum(diploid) 3	14.001
	CNS0095597	Whole white alabastrum(diploid) 4	33.254
	CNS0095598	Silvery flower (diploied) 1	78.522
	CNS0095599	Silvery flower (diploied) 2	52.386
	CNS0095600	Silvery flower (diploied) 3	56.823
	CNS0095601	Golden flower (diploid) 1	48.870
	CNS0095602	Golden flower (diploid) 2	72.113
	CNS0095603	Golden flower (diploid) 3	69.518
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.695
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.571
	CNS0095606	Slightly white alabastrum(tetraploid) 3	98.544
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.334
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.816
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.556
	CNS0095610	Silvery flower (tetraploid) 1	61.701
	CNS0095611	Silvery flower (tetraploid) 2	66.445
	CNS0095612	Silvery flower (tetraploid) 3	56.049
	CNS0095613	Golden flower (tetraploid) 1	20.393
	CNS0095614	Golden flower (tetraploid) 2	43.110
	CNS0095615	Golden flower (tetraploid) 3	30.282
CRA001975	CRR073297	Stem 1	108.160
	CRR073298	Stem 2	96.643
	CRR073299	Stem 3	106.327
	CRR073300	Leaf 1	73.066
	CRR073301	Leaf 2	60.707
	CRR073302	Leaf 3	62.061
	CRR073303	Juvenile bud 1	59.793
	CRR073304	Juvenile bud 2	114.158
	CRR073305	Juvenile bud 3	106.111
	CRR073306	Third green 1	38.075
	CRR073307	Third green 2	33.641
	CRR073308	Third green 3	54.702
	CRR073309	Second white 1	65.649
	CRR073310	Second white 2	63.727
	CRR073311	Second white 3	77.222
	CRR073312	Silver flowering 1	50.245
	CRR073313	Silver flowering 2	47.309
	CRR073314	Silver flowering 3	29.015
	CRR073315	Gold flowering 1	43.819
	CRR073316	Gold flowering 2	92.359
	CRR073317	Gold flowering 3	74.417
	CRR073318	Tawny withering 1	35.528
	CRR073319	Tawny withering 2	45.447
	CRR073320	Tawny withering 3	29.519