Detail information of GWHGAAZE017624


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006358195.10PREDICTED: signal recognition particle subunit SRP68-like [Solanum tuberosum]
trEMBLtr|A0A061FYN7|A0A061FYN7_THECC0Signal recognition particle subunit SRP68 {ECO:0000256|PIRNR:PIRNR038995}
TAIR10AT5G61970.10signal recognition particle-related / SRP-related

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene87098238716109-
GWHAAZE00000005mRNA87098238716109-
GWHAAZE00000005exon87098238710023-
GWHAAZE00000005exon87103598710508-
GWHAAZE00000005exon87106488710777-
GWHAAZE00000005exon87114698711578-
GWHAAZE00000005exon87119428712148-
GWHAAZE00000005exon87122698712396-
GWHAAZE00000005exon87134178713528-
GWHAAZE00000005exon87136468713841-
GWHAAZE00000005exon87140868714171-
GWHAAZE00000005exon87148438715038-
GWHAAZE00000005exon87155618715671-
GWHAAZE00000005exon87158438715935-
GWHAAZE00000005exon87160488716109-
GWHAAZE00000005CDS87160488716109-
GWHAAZE00000005CDS87158438715935-
GWHAAZE00000005CDS87155618715671-
GWHAAZE00000005CDS87148438715038-
GWHAAZE00000005CDS87140868714171-
GWHAAZE00000005CDS87136468713841-
GWHAAZE00000005CDS87134178713528-
GWHAAZE00000005CDS87122698712396-
GWHAAZE00000005CDS87119428712148-
GWHAAZE00000005CDS87114698711578-
GWHAAZE00000005CDS87106488710777-
GWHAAZE00000005CDS87103598710508-
GWHAAZE00000005CDS87098238710023-
Transcript Sequence

Network for GWHGAAZE017624

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16969.6SRP68435771.00E-156
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03107SRP68 Protein export map03060

Gene Ontology

GO term OntologyName
GO:0006614biological_processSRP-dependent cotranslational protein targeting to membrane
GO:0005786cellular_componentsignal recognition particle, endoplasmic reticulum targeting
GO:0005047molecular_functionsignal recognition particle binding
GO:0008312molecular_function7S RNA binding
GO:0030942molecular_functionendoplasmic reticulum signal peptide binding
GO:0003723molecular_functionRNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf32.761
SRR3591706second leaf20.434
SRR3591707mature leaf13.427
SRR3591708Shoot apex26.923
SRR3591709Stem25.379
SRR3591710White floral bud25.107
SRR3591711White flower27.849
SRR3591712Green floral bud31.970
SRR3591713Yellow flower27.371
SRP173429 SRR8316895Juvenile bud stage 20.823
SRR8316896Juvenile bud stage 33.796
SRR8316897Juvenile bud stage 13.944
SRR8316894Third green stage 14.655
SRR8316900Third green stage 35.133
SRR8316901Third green stage 32.478
SRR8316898Complete white stage 9.012
SRR8316899Complete white stage 34.180
SRR8316903Complete white stage 17.051
SRR8316902Silver flowering stage10.477
SRR8316904Silver flowering stage15.545
SRR8316905Silver flowering stage5.519
SRR8316906Gold flowering stage 21.770
SRR8316907Gold flowering stage 22.979
SRR8316908Gold flowering stage 24.778
SRP132670SRR6706286Control25.756
SRR6706287Light intensity 50%27.138
SRR6706288Light intensity 20%27.742
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.179
CNS0095593Slightly white alabastrum(diploid) 220.242
CNS0095594Slightly white alabastrum(diploid) 321.403
CNS0095595Whole white alabastrum(diploid) 219.835
CNS0095596Whole white alabastrum(diploid) 319.012
CNS0095597Whole white alabastrum(diploid) 417.104
CNS0095598Silvery flower (diploied) 117.660
CNS0095599Silvery flower (diploied) 214.628
CNS0095600Silvery flower (diploied) 320.062
CNS0095601Golden flower (diploid) 112.616
CNS0095602Golden flower (diploid) 218.189
CNS0095603Golden flower (diploid) 315.938
CNS0095604Slightly white alabastrum(tetraploid) 124.026
CNS0095605Slightly white alabastrum(tetraploid) 220.286
CNS0095606Slightly white alabastrum(tetraploid) 330.180
CNS0095607Whole white alabastrum(tetraploid) 116.683
CNS0095608Whole white alabastrum(tetraploid) 214.480
CNS0095609Whole white alabastrum(tetraploid) 326.413
CNS0095610Silvery flower (tetraploid) 122.943
CNS0095611Silvery flower (tetraploid) 218.917
CNS0095612Silvery flower (tetraploid) 316.503
CNS0095613Golden flower (tetraploid) 113.878
CNS0095614Golden flower (tetraploid) 218.438
CNS0095615Golden flower (tetraploid) 318.517
CRA001975CRR073297Stem 123.099
CRR073298Stem 221.360
CRR073299Stem 316.814
CRR073300Leaf 120.704
CRR073301Leaf 220.475
CRR073302Leaf 318.972
CRR073303Juvenile bud 119.379
CRR073304Juvenile bud 213.888
CRR073305Juvenile bud 318.371
CRR073306Third green 17.355
CRR073307Third green 27.931
CRR073308Third green 37.918
CRR073309Second white 16.994
CRR073310Second white 29.528
CRR073311Second white 38.169
CRR073312Silver flowering 110.093
CRR073313Silver flowering 29.021
CRR073314Silver flowering 39.033
CRR073315Gold flowering 15.169
CRR073316Gold flowering 27.684
CRR073317Gold flowering 35.138
CRR073318Tawny withering 119.421
CRR073319Tawny withering 216.522
CRR073320Tawny withering 315.652