Gene detail

Detail information of GWHGAAZE017589

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007024815.1	0	Kinase superfamily protein isoform 2 [Theobroma cacao]
Swissprot	tr\|O23304\|BLUS1_ARATH	4E-89	Serine/threonine-protein kinase BLUS1
trEMBL	tr\|A0A061GE47\|A0A061GE47_THECC	0	Kinase superfamily protein isoform 2 {ECO:0000313\|EMBL:EOY27437.1}
TAIR10	AT1G79640.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	8300648	8313260	+
GWHAAZE00000005	mRNA	8300648	8313260	+
GWHAAZE00000005	exon	8300648	8300732	+
GWHAAZE00000005	exon	8300850	8301116	+
GWHAAZE00000005	exon	8302542	8302796	+
GWHAAZE00000005	exon	8303564	8303688	+
GWHAAZE00000005	exon	8303965	8304009	+
GWHAAZE00000005	exon	8304102	8304183	+
GWHAAZE00000005	exon	8304270	8304338	+
GWHAAZE00000005	exon	8304423	8304593	+
GWHAAZE00000005	exon	8304673	8304738	+
GWHAAZE00000005	exon	8305750	8305884	+
GWHAAZE00000005	exon	8305975	8306045	+
GWHAAZE00000005	exon	8306275	8306511	+
GWHAAZE00000005	exon	8307771	8307887	+
GWHAAZE00000005	exon	8308017	8308131	+
GWHAAZE00000005	exon	8308206	8308247	+
GWHAAZE00000005	exon	8309049	8309171	+
GWHAAZE00000005	exon	8309251	8309299	+
GWHAAZE00000005	exon	8309373	8309434	+
GWHAAZE00000005	exon	8311023	8311084	+
GWHAAZE00000005	exon	8311533	8311584	+
GWHAAZE00000005	exon	8312241	8312268	+
GWHAAZE00000005	exon	8313127	8313260	+
GWHAAZE00000005	five_prime_UTR	8300648	8300732	+
GWHAAZE00000005	five_prime_UTR	8300850	8300957	+
GWHAAZE00000005	CDS	8300958	8301116	+
GWHAAZE00000005	CDS	8302542	8302796	+
GWHAAZE00000005	CDS	8303564	8303688	+
GWHAAZE00000005	CDS	8303965	8304009	+
GWHAAZE00000005	CDS	8304102	8304183	+
GWHAAZE00000005	CDS	8304270	8304338	+
GWHAAZE00000005	CDS	8304423	8304593	+
GWHAAZE00000005	CDS	8304673	8304738	+
GWHAAZE00000005	CDS	8305750	8305884	+
GWHAAZE00000005	CDS	8305975	8306045	+
GWHAAZE00000005	CDS	8306275	8306511	+
GWHAAZE00000005	CDS	8307771	8307887	+
GWHAAZE00000005	CDS	8308017	8308131	+
GWHAAZE00000005	CDS	8308206	8308247	+
GWHAAZE00000005	CDS	8309049	8309171	+
GWHAAZE00000005	CDS	8309251	8309299	+
GWHAAZE00000005	CDS	8309373	8309434	+
GWHAAZE00000005	CDS	8311023	8311084	+
GWHAAZE00000005	CDS	8311533	8311584	+
GWHAAZE00000005	CDS	8312241	8312268	+
GWHAAZE00000005	CDS	8313127	8313260	+

Transcript Sequence
>GWHTAAZE017609 ATTCTATTGTATATATATTCGAAATTTCTATTTGATTGCTTGCTTCTACGCTGTGGTTTAACACATGGACCGAAAATCAATCCCCATTAAGTCATTTAGAATTCGGATCCGTAGATCGCATGTAAGCTGTATCTGCGTGTTGTTCTACATTGAGTAGCGAAGATTGTAGCAATAGACACACAAAGTCCGAATCATGGATAAGAAGAAGTATCCAATCGGACCTGACTATTATACTCTGTACGAGGAGATTGGTCAGGGCGTTAGCGCTTTGGTTCATCGTGCTCTCTGCATCCCCCACGATGAGGTGGTTGCAATCAAAATTCTCGACTTCGAACGCGACAATTGTGATCTGAATAACATATCTCGTGAAGCTCAAACAATGTTCCTGGTTGATCACCCTAACGTTCTCAAATCACACTGCTCCTTTGTTGCTGATCATAATCTGTGGGTTGTCATGCCTTACATGGCTGGGGGTTCTTGTCTTCATATATTGAAGTCTACACATCCAGAGGGTTTTGAGGAGGTTGTTATAGCAACAATATTGCGTGATGTATTGAAGGCCTTGGAGTATCTTCATCATCATGGACATATTCATCGTGATGTCAAAGCTGGAAATATTCTCATTGGTTCACGTGGAGCAATCAAGCTCGGAGATCTTGGGGTTTCTGCTTGCCTGTTTGATTCGGGTGATAGACAACGTGTGAGAAATACTTTCGTGGGGACCCCTTGTTGGATGGCACCTGAAGTTATGGAGCAGTTGCATGGTTATGACTTCAAAGCTGATATCTGGTCATTCGGTATAACTGCTCTGGAGCTTGCTCATGGCCATGCTCCTTTCTCAAAATATCCTCCAATGAAGGTTTTGCTTATGACCTTGCAAAATGCACCCCCTGGACTTGATTATGAGAGGGACAAGAAGTTCTCAAAGTCTTTTAAGCAGATGATTGCTAGTTGTTTGGTTAAAGATCCTTTGAAAAGGCCTTCAGCAACAAGGTTGCTGAAACATTCCTTTTTCAAACAAGCTAGATCAAATGACTATATAGCAAGAACTCTTCTAGAGGGGTTACCTGCGCTTGGTGACCGTCTCCAGGCATTGAAGAGAAAGGAAGAAGACATGCTAGCACAAAAGAAAATACCAGACGGGCAAAAGGAGGAAATATCACAGATACAGGATGACGACACTATATCCATCAAAGACCAAGAGGGGAGATCTATTTCTTTCTCTGAGCTTGATATGGACGAAAAGAAACTCAAAAATCAGTTGTTTTCCGCGGGCCAATTTTCAGAAGCTGAAGATATGGAAGACAATAACCTTATGTGCAAAGAACCTGCTCCTCAATTATCAGTCGACTCTGCTGTGACTTATACGAGAGGCAGATATGAGAAATCTGATGATGACATCAGTTCATCTCATGAACATCAGTTCTCACTAAATTGTTCTCCTCGTCAAGAAAACCACACGGAGAATAGTTTGGCTGGAAAAGCTGACATGGAAACTAATGGAAGATCCTTGGAGGGCGTGACCACACATTCTCATCAGAGGAGGGGAGGTTCTTCAGGAAGCATCAATTTACTAGAGACTGGTTTTCCTGTTTCCAAAGTTGAGAGTGATAAGCTGCCAAACCATTTCCGAAGCTTGACAACTTTCAATGGGGCTTCCGTCCCTCCAACAATAGATGAACTATCTGCTGAAACTCTTCCTAGAGTTCCCAAAACATCTGGCAATTACAATTTTGGTGAAACAGGTAACTGTGATGAACAAGATGAGAAAGTGAAGTGTCCTGTTGTTCAACAAAGAGGACGATTCAAAGTTACATCTGAAAACGTCGATTTAGAAAAGGCGGTTCCATCTGCTCTGCTACAAAAAAGTCACAGCATGCAGGTGATTTCCCAACATTCCGCTCTCTCTCTTCCATCACCATGTGATGCTACACCACCATATCATCTTGGCCCTTCCCTCTTTCCAGTGTTGCAGTCTGTTTTGCAAACAAATATTATTCAGAGGGACGGTATTCTGAGTCTGATGAAGCAGCTCTCTTATGGTGACTCTACAGTCAACCATGCAGTAGATGGAGGATGCACCTCAATGACTACGACTGGGACAGAGAAATCTTTGCTAGAGGCAGCTCATGATAGGGAGAAGGAATTACTTCATGAAGTAACTGATTTACAGTGGAGGCTCATTTGTGCCCAAGAAGAGCTCCAAAAATACAAAACAGAACATCCTCAGGTGCTAAGCTGTCTGATGGCATTTTCAGGGGCTATATCAAATGTTGTGTCCGGTACTGTTGGTCCTCAAGCTGATGTTAAGGACGGGTCCAAGTCCGGTGCCGCACATGCCGATGGATCCAAGTTGAGATCTGGGTATGGGTTAGGATCTGGAGAGGTCTAG

Network for GWHGAAZE017589

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	13	274	2.90E-56

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE20-Fray

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.019
	SRR3591706	second leaf	8.551
	SRR3591707	mature leaf	1.943
	SRR3591708	Shoot apex	3.631
	SRR3591709	Stem	2.581
	SRR3591710	White floral bud	10.260
	SRR3591711	White flower	1.472
	SRR3591712	Green floral bud	16.607
	SRR3591713	Yellow flower	1.785
SRP173429	SRR8316895	Juvenile bud stage	3.548
	SRR8316896	Juvenile bud stage	11.352
	SRR8316897	Juvenile bud stage	5.181
	SRR8316894	Third green stage	5.154
	SRR8316900	Third green stage	14.259
	SRR8316901	Third green stage	15.843
	SRR8316898	Complete white stage	0.430
	SRR8316899	Complete white stage	1.687
	SRR8316903	Complete white stage	1.204
	SRR8316902	Silver flowering stage	0.616
	SRR8316904	Silver flowering stage	0.996
	SRR8316905	Silver flowering stage	0.316
	SRR8316906	Gold flowering stage	1.753
	SRR8316907	Gold flowering stage	0.889
	SRR8316908	Gold flowering stage	0.670
SRP132670	SRR6706286	Control	7.307
	SRR6706287	Light intensity 50%	7.672
	SRR6706288	Light intensity 20%	7.383
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.369
	CNS0095593	Slightly white alabastrum(diploid) 2	6.255
	CNS0095594	Slightly white alabastrum(diploid) 3	9.168
	CNS0095595	Whole white alabastrum(diploid) 2	16.126
	CNS0095596	Whole white alabastrum(diploid) 3	17.719
	CNS0095597	Whole white alabastrum(diploid) 4	12.596
	CNS0095598	Silvery flower (diploied) 1	0.261
	CNS0095599	Silvery flower (diploied) 2	0.956
	CNS0095600	Silvery flower (diploied) 3	1.411
	CNS0095601	Golden flower (diploid) 1	0.574
	CNS0095602	Golden flower (diploid) 2	0.800
	CNS0095603	Golden flower (diploid) 3	0.947
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.199
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.223
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.630
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.491
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.735
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.713
	CNS0095610	Silvery flower (tetraploid) 1	0.912
	CNS0095611	Silvery flower (tetraploid) 2	0.516
	CNS0095612	Silvery flower (tetraploid) 3	2.198
	CNS0095613	Golden flower (tetraploid) 1	0.463
	CNS0095614	Golden flower (tetraploid) 2	0.263
	CNS0095615	Golden flower (tetraploid) 3	1.537
CRA001975	CRR073297	Stem 1	5.344
	CRR073298	Stem 2	5.199
	CRR073299	Stem 3	3.026
	CRR073300	Leaf 1	9.860
	CRR073301	Leaf 2	9.529
	CRR073302	Leaf 3	5.459
	CRR073303	Juvenile bud 1	6.251
	CRR073304	Juvenile bud 2	4.831
	CRR073305	Juvenile bud 3	1.911
	CRR073306	Third green 1	2.273
	CRR073307	Third green 2	2.104
	CRR073308	Third green 3	2.141
	CRR073309	Second white 1	0.553
	CRR073310	Second white 2	0.891
	CRR073311	Second white 3	0.619
	CRR073312	Silver flowering 1	2.775
	CRR073313	Silver flowering 2	2.210
	CRR073314	Silver flowering 3	1.321
	CRR073315	Gold flowering 1	2.767
	CRR073316	Gold flowering 2	2.248
	CRR073317	Gold flowering 3	0.788
	CRR073318	Tawny withering 1	2.333
	CRR073319	Tawny withering 2	2.360
	CRR073320	Tawny withering 3	2.585