Detail information of GWHGAAZE017576


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHG26605.11.6151E-106Small nuclear ribonucleoprotein-associated B' [Gossypium arboreum]
trEMBLtr|A5BRN5|A5BRN5_VITVI3E-104Small nuclear ribonucleoprotein-associated protein {ECO:0000256|PIRNR:PIRNR037187}
TAIR10AT4G20440.42E-51small nuclear ribonucleoprotein associated protein B

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene81421118143130+
GWHAAZE00000005mRNA81421118143130+
GWHAAZE00000005exon81421118142117+
GWHAAZE00000005exon81421908143130+
GWHAAZE00000005CDS81421118142117+
GWHAAZE00000005CDS81421908143130+
Transcript Sequence

Network for GWHGAAZE017576

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01423.23LSM411142.70E-18
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K11086SNRPB, SMB Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.925
SRR3591706second leaf3.899
SRR3591707mature leaf1.318
SRR3591708Shoot apex16.776
SRR3591709Stem5.334
SRR3591710White floral bud4.365
SRR3591711White flower5.189
SRR3591712Green floral bud5.850
SRR3591713Yellow flower1.921
SRP173429 SRR8316895Juvenile bud stage 15.052
SRR8316896Juvenile bud stage 17.722
SRR8316897Juvenile bud stage 4.583
SRR8316894Third green stage 5.995
SRR8316900Third green stage 13.925
SRR8316901Third green stage 17.024
SRR8316898Complete white stage 3.719
SRR8316899Complete white stage 18.516
SRR8316903Complete white stage 6.947
SRR8316902Silver flowering stage5.607
SRR8316904Silver flowering stage6.106
SRR8316905Silver flowering stage1.895
SRR8316906Gold flowering stage 9.866
SRR8316907Gold flowering stage 12.550
SRR8316908Gold flowering stage 8.762
SRP132670SRR6706286Control14.212
SRR6706287Light intensity 50%12.883
SRR6706288Light intensity 20%12.730
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.046
CNS0095593Slightly white alabastrum(diploid) 218.381
CNS0095594Slightly white alabastrum(diploid) 315.926
CNS0095595Whole white alabastrum(diploid) 210.550
CNS0095596Whole white alabastrum(diploid) 313.317
CNS0095597Whole white alabastrum(diploid) 49.911
CNS0095598Silvery flower (diploied) 115.445
CNS0095599Silvery flower (diploied) 215.478
CNS0095600Silvery flower (diploied) 316.610
CNS0095601Golden flower (diploid) 113.925
CNS0095602Golden flower (diploid) 211.215
CNS0095603Golden flower (diploid) 312.548
CNS0095604Slightly white alabastrum(tetraploid) 17.923
CNS0095605Slightly white alabastrum(tetraploid) 211.672
CNS0095606Slightly white alabastrum(tetraploid) 312.886
CNS0095607Whole white alabastrum(tetraploid) 18.461
CNS0095608Whole white alabastrum(tetraploid) 24.223
CNS0095609Whole white alabastrum(tetraploid) 36.260
CNS0095610Silvery flower (tetraploid) 16.753
CNS0095611Silvery flower (tetraploid) 28.643
CNS0095612Silvery flower (tetraploid) 38.418
CNS0095613Golden flower (tetraploid) 15.797
CNS0095614Golden flower (tetraploid) 24.961
CNS0095615Golden flower (tetraploid) 35.053
CRA001975CRR073297Stem 125.777
CRR073298Stem 227.398
CRR073299Stem 336.592
CRR073300Leaf 126.032
CRR073301Leaf 225.559
CRR073302Leaf 318.725
CRR073303Juvenile bud 118.236
CRR073304Juvenile bud 215.486
CRR073305Juvenile bud 330.179
CRR073306Third green 13.205
CRR073307Third green 25.686
CRR073308Third green 37.025
CRR073309Second white 19.361
CRR073310Second white 211.668
CRR073311Second white 38.542
CRR073312Silver flowering 16.643
CRR073313Silver flowering 213.184
CRR073314Silver flowering 38.559
CRR073315Gold flowering 112.036
CRR073316Gold flowering 215.584
CRR073317Gold flowering 317.340
CRR073318Tawny withering 126.235
CRR073319Tawny withering 221.417
CRR073320Tawny withering 330.990