Gene detail

Detail information of GWHGAAZE017566

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO98228.1	2.88E-153	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068TSC5\|A0A068TSC5_COFCA	1E-153	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO98228.1}
TAIR10	AT5G57970.2	2E-61	DNA glycosylase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	8059414	8063931	-
GWHAAZE00000005	mRNA	8059414	8063931	-
GWHAAZE00000005	exon	8059414	8059791	-
GWHAAZE00000005	exon	8060412	8060501	-
GWHAAZE00000005	exon	8060614	8060697	-
GWHAAZE00000005	exon	8061320	8061461	-
GWHAAZE00000005	exon	8061575	8061658	-
GWHAAZE00000005	exon	8061770	8061827	-
GWHAAZE00000005	exon	8063415	8063931	-
GWHAAZE00000005	CDS	8063415	8063931	-
GWHAAZE00000005	CDS	8061770	8061827	-
GWHAAZE00000005	CDS	8061575	8061658	-
GWHAAZE00000005	CDS	8061320	8061461	-
GWHAAZE00000005	CDS	8060614	8060697	-
GWHAAZE00000005	CDS	8060412	8060501	-
GWHAAZE00000005	CDS	8059414	8059791	-

Transcript Sequence
>GWHTAAZE017586 ATGTCGGGGCCGCCGCGAGTCAGATCAATGAATTGTGCAGAGTCGGAATCTCGACCGGTTCTCGGACCTGCCGGAAACAAGGAGAGATCTATAGAAGTGCGTAAGCCGGTTTCGAAACCCAAGAGTAAAGTAGAGAAAACACAAGAAATAGGCGAAACCAAGGGCAAAAAAGCTCCGTCATTGGTTGTTCCCTCACCTTCACCTTCACCGTCACCTCCACATTTAAATTGTGTTTCTGTGCCTTCAATTTTGAGACAGAGAGACCAGAAGGCACTACTCAGGTCGAATTTATCGCTCGATGCGTCGTGTTCGTCTGATGCGTCATCAGATTCGTCACATAGCAGAGCTTCGACTGGGAAGATTAGTCGACGGAGTTCGACTCTAACCTCGATTCGAAGGAAGCAATGTGTTTCCAAGACTGAAAAGGTTGTTACTGATACTGAAACTGTACCGTTAGCTTTGCCTGATGCCTCTTCACCTTGCAAAAAAAGGTGTGCTTGGGTAACTCCAAACACAGATCCTTGTTACAGTGCTTTTCATGATGAAGAATGGGGAGTTCCGGTCCACGATGACAAGAAACTCTTTGAATTGCTCAGTTTATCTGCCGCCTTGGCTGAACTTACATGGCCTGCCATTCTCAATAAAAGGCATTTATTTAGAGAAGTGTTTCAGGAATTTGATCCCCTTGCCGTCTCAAAAATAAATGAGAAGAAGATAGCAACACCTGGAAACCCTGCAAGCTGTCTTATATCGGAGCTCAAGCTGCGAGGAGTCATTGAAAATGCACGTCAAATATGCAAGTTTTTTGGGCAATGGAAAACAGAAAGACAGAAGTTCCTTGAGTTAACCATGGGTTACTTGAAATTATCTGGAGTGCTTGATTTGACCATGATGAGCTGGTGCGATACTTGTATGCAGACCCCAACTACTGAGTTTTTCTTCTTATTTCAGATATTCAATGCTCCGTTAATGGAGATAATAGATGAGTTTGGGTCCTTTGACAAGTATATATGGGGCTTTGTAAATGGTAGGCCTACAGTGAGTAACTTCCGGTATCCCCGACAAGTTCCTATAAAGACATCAAAAGCAGAAGCGATTAGCAAGGACCTTGTGAGAAGAGGGTTTCGAGGGGTGGGGCCTACGGTCGTCTACTCATTCATGCAAGTGGCCGGTATAACAAATGACCATCTCATCAGTTGCTTCAGGTTCCAGGAATGTATAGCCTCAGGAGAAGGAAGGGGTAAAGATGACATTTCCAATGCCAAAGCCGAAGGGAAACTAGATGAGGCTGAGGATGCAACTGACCTTGGACTGGTTACGAGTATTGATGATTTGTGTTTACCCACTGAGTAG

Network for GWHGAAZE017566

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03352.14	Adenine_glyco	171	269	4.90E-29
PF03352.14	Adenine_glyco	323	402	1.00E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01246	tag	Base excision repair	map03410

Gene Ontology

GO term	Ontology	Name
GO:0006284	biological_process	base-excision repair
GO:0006281	biological_process	DNA repair
GO:0008725	molecular_function	DNA-3-methyladenine glycosylase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.978
	SRR3591706	second leaf	15.475
	SRR3591707	mature leaf	9.649
	SRR3591708	Shoot apex	28.232
	SRR3591709	Stem	17.556
	SRR3591710	White floral bud	12.077
	SRR3591711	White flower	6.820
	SRR3591712	Green floral bud	18.301
	SRR3591713	Yellow flower	2.295
SRP173429	SRR8316895	Juvenile bud stage	15.865
	SRR8316896	Juvenile bud stage	23.313
	SRR8316897	Juvenile bud stage	9.491
	SRR8316894	Third green stage	6.488
	SRR8316900	Third green stage	14.556
	SRR8316901	Third green stage	18.100
	SRR8316898	Complete white stage	4.399
	SRR8316899	Complete white stage	21.249
	SRR8316903	Complete white stage	5.947
	SRR8316902	Silver flowering stage	2.477
	SRR8316904	Silver flowering stage	2.852
	SRR8316905	Silver flowering stage	1.307
	SRR8316906	Gold flowering stage	2.504
	SRR8316907	Gold flowering stage	2.410
	SRR8316908	Gold flowering stage	1.863
SRP132670	SRR6706286	Control	14.677
	SRR6706287	Light intensity 50%	14.572
	SRR6706288	Light intensity 20%	15.798
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.619
	CNS0095593	Slightly white alabastrum(diploid) 2	16.105
	CNS0095594	Slightly white alabastrum(diploid) 3	12.778
	CNS0095595	Whole white alabastrum(diploid) 2	12.916
	CNS0095596	Whole white alabastrum(diploid) 3	10.868
	CNS0095597	Whole white alabastrum(diploid) 4	12.169
	CNS0095598	Silvery flower (diploied) 1	16.497
	CNS0095599	Silvery flower (diploied) 2	19.205
	CNS0095600	Silvery flower (diploied) 3	11.392
	CNS0095601	Golden flower (diploid) 1	23.320
	CNS0095602	Golden flower (diploid) 2	13.435
	CNS0095603	Golden flower (diploid) 3	14.262
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.542
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.408
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.474
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.889
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.021
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.841
	CNS0095610	Silvery flower (tetraploid) 1	4.623
	CNS0095611	Silvery flower (tetraploid) 2	6.070
	CNS0095612	Silvery flower (tetraploid) 3	2.701
	CNS0095613	Golden flower (tetraploid) 1	1.539
	CNS0095614	Golden flower (tetraploid) 2	2.752
	CNS0095615	Golden flower (tetraploid) 3	0.163
CRA001975	CRR073297	Stem 1	14.337
	CRR073298	Stem 2	11.936
	CRR073299	Stem 3	15.513
	CRR073300	Leaf 1	11.877
	CRR073301	Leaf 2	14.296
	CRR073302	Leaf 3	10.919
	CRR073303	Juvenile bud 1	11.271
	CRR073304	Juvenile bud 2	8.162
	CRR073305	Juvenile bud 3	16.452
	CRR073306	Third green 1	1.841
	CRR073307	Third green 2	2.612
	CRR073308	Third green 3	1.624
	CRR073309	Second white 1	0.366
	CRR073310	Second white 2	0.200
	CRR073311	Second white 3	0.272
	CRR073312	Silver flowering 1	0.070
	CRR073313	Silver flowering 2	0.199
	CRR073314	Silver flowering 3	0.132
	CRR073315	Gold flowering 1	7.526
	CRR073316	Gold flowering 2	12.257
	CRR073317	Gold flowering 3	5.067
	CRR073318	Tawny withering 1	19.598
	CRR073319	Tawny withering 2	11.035
	CRR073320	Tawny withering 3	18.646