Gene detail

Detail information of GWHGAAZE017551

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010654870.1	PREDICTED: nuclear pore complex protein NUP96 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q8LLD0\|NUP96_ARATH	Nuclear pore complex protein NUP96 {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|A0A068TSB3\|A0A068TSB3_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO98208.1}
TAIR10	AT1G80680.1	SUPPRESSOR OF AUXIN RESISTANCE 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	7842423	7847244	+
GWHAAZE00000005	mRNA	7842423	7847244	+
GWHAAZE00000005	exon	7842423	7844984	+
GWHAAZE00000005	exon	7845172	7845295	+
GWHAAZE00000005	exon	7845804	7845952	+
GWHAAZE00000005	exon	7846604	7846701	+
GWHAAZE00000005	exon	7847049	7847244	+
GWHAAZE00000005	CDS	7842423	7844984	+
GWHAAZE00000005	CDS	7845172	7845295	+
GWHAAZE00000005	CDS	7845804	7845952	+
GWHAAZE00000005	CDS	7846604	7846701	+
GWHAAZE00000005	CDS	7847049	7847244	+

Transcript Sequence
>GWHTAAZE017571 ATGGGCATTGAGGTGGGGACTTTTGAACCACTTTCTCAATCCCAGTACAAAAAAAGAAAAGTTATTCCGAATGGCCAATGTTCCTTTCCAGCACTTCCAGCTTTGTGTGACATGGAAGCTTCCTTACCTACCTTGCGATCTTCCGATTATTTTATGGAACCTTGTTTCGATGAATTGGCCACTCGGGAAATCATAGATCCAGGTTATTGCAGCAGAGTTGAGAATTTTACAGTTGGAAGGCCCGGTTATGGTTGTGTAAAATTTACTGGGGAGACTGATATTAGATGGTTGGATTTAGATCGAATTATCAAGTTCAGTAGGCATGAGATAGTTGTTTATGAAGATGAAAATGCCAAGCCTGCTGTTGGTAAGGGTCTTAACAAGGCAGCAGAAGTGACTTTGGTGCTGCAAATAAAATTTTCAACAGATTACAGAGAAGAACAAATAAGTGAAGTTGTTGACAAATTAAGGCTATGCACAGAGCAACAGGGAGCTGACTTCATTTCGTTTGATCCGTCAAATGGAGAATGGAAATTCTCAGTTCGCCATTTTAGCAGATTTGGGTTGGGTGAAGATGAAGAAGAAGATATCACTATGGATGATATGGCTTCCGAAGTTCAAGATCCAGTGGAGCTGGATGGCAGCGAGGTCTCTGATATTGATGAAGAAACTGCCATTGTGGATCCGGTTATGCTTTCACATTCCCTTCCTGCTCACCTTGGGCTTGATCCTGCCAAGATGAGAGAAATGAGAATGTTGATGTTTCCTGGGGAGGAAGAGGAGCCTGAGGAATTCAACGTTACACTTTCCCATAATAGAATACCCTTCAACAAAGAGTCCAAGATATCTCCTTTACAGCATTCTTCTCGGACGGTCCATAGATCTAGCCCTCCATTAACACGGAAGACTCCTTTAGCTTTGCTTGAGTACAACCCTGGTAGTTTCAACTCGAGCTCTCCCGGATCCATCTTAATGGCCCCACAAAATAAGACCCTCCCTTTGAAGACTACTAAAACGGAAGGTTTTAAGCTCGAGCTCAGGCATGAAACACCAGTAACTAGAAACCACTCTCGGAATATAGTTGATGCGGCACTGTTCATGGGTAGGTCGTTTCGTGTAGGATGGGGTCCTAATGGTGTCCTTGTTCACACTGGTGCACCTGTGGGTAGTCGTAATCCTCAGAGGGTATTATCTTCTGCAATCAATTTAGAGAAAGTTGCGATTGACAAAGTGGTTAGGGACGGAAATAACAAAGTAAGAGAGGAACTTATCGATTCGTGTTTTGGCTTTCCTCTAAATCTTCACAAGGAATTAAACTATGAAATGAAAGAAGTTGGAGATGGCCACTTCAAACTTAAGCTTCGGAAACTAGGTTGTAATAGATCGACACTTTCAGAGGTTTGCAGGGGCTATATAGGAATTATTGAGAGTCAACTGGAGGTTCCTGGGTTATCTTCTTATGCACGAGTAGTGTTGATGCACCAAGTAATGGTCTGGGAACTAATAAAAGTTCTATTCTCCTCAAGGGAAATTAGTGGCCAATCAAAGTCTGTGGGTGCTGAAATCGAGGAAGATATGATGCATGACAGGAAGGAAAGTTCTCAAGAATTTGATCCGGAAGCACTTCCATTAATTCGGAGAGCAGAGTTCAGTTATTGGTTGCAAGAGAGTGTTTGCCATCGGGTACAAGAGGAAGTAAGCTCCTTGAACGAATCAAATGATTTGGAACACATATTGTTACTCCTAACTGGGCGACAGCTGGATACAGCTGTAGAAGTAGCTGCTTCTAGAGGAGATGTGAGACTGGCTTGTCTATTGAGCCAGGCTGGGGGGTCCCCCGCCAATCGCTCTGATATTACTAGGCAGCTCGATCTTTGGAGACTCAATGGGCTGGACTTCAGTTTTATTGAGAAGGATAGAATAAGGCTTTTAGAATTGCTTGCAGGTGATATTCATGGTGCTATGCAGGATGTAAAAGTTGACTGGAAAAGATTCCTAGGAGTGCTTATGTGGTATCAGCTTCCACCTGACACCTCGTTGCCCATTGTTTTTCACAAGTATCAGCAGCTTCTACAAGATGGAAGTGCCCCATATCCGGTTCCAGTTTACATTGATGAAGGACCGGTAGAAGAAGTTGTGAATTGGAGTCCGGGTCAATGTTTTGACCTTGCATATTATTTGATGCTTCTTCATGCATGTGAAGAGAGCAAGTTTGGTGCTCTGAAGACCATGTTCAGTGCCTTTGCTTCAACACATGATCCACTTGACTACCACATGATTTGGCATCAGCGTGCAGTGTTAGAAGCAGTTGGGACTTTCAGTTCGAATGATCTTCATGTTCTTGATATGGGACTTGTTTCCCAGTTGCTGTGTCTTGGGCAATGTCATTGGGCCATATACGTAGTGCTTAACATGCCCCATCGCGAAGATTATCCTTCTCTGCAGGCTAATGTTATTAGAGAAATCTTGTTCCAGTATTCTGAAACTTGGAGTAACAAAGAATCACAACGCCAATTTATTGAGGAGTTGGGCATTCCGTCAGCATGGTTGCACGAGGCACTGGCGGTATATTCTATTTACTATGGAGATCATTCAAAGGCCCTCGAAAACTTCCTTGAATGCTCAAATTGGCAAAAAGCACACTCAGTTTTTGTAACATCAGTTTTTCATTCTATGTTCTTGTCAGGGAAACATTCAGAGATATGGAGGCTTGCAACTTCTATGGAAGACCACAAGTCAGAAATTGAAGATTGGGACCTGGGAGCTGGAATTTATATTTCCTTCTATCTATTAAGAAGTTCCTTGCAGGAAGACAGCAATACCATGACTGAACTGGATACTCTTGAGAACAAAAACGATGCTTGTACAGACTTTCTGGGTCGCTTGAATCAATCTTTGGCAGTTTGGGCAAACAAATTACCTGCTGACGCGAGGGTGGCATATTCAAGGATGGCGGAGGAGATATGCATTTTGCTAGTAGCTGATAGCGGTGAGGGTTCAACACGAGAGGTTCAATTAAGCTGCTACAACACCATATTTAGTGCACCCATCCCCGAAGACATTCGCTCTTGTCATTTGCAGGATGCAGTTTCGCTTTTTACCTCATATCTTTCTGAGGCAGCCTTGTAG

Network for GWHGAAZE017551

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04096.15	Nucleoporin2	48	189	1.20E-37
PF12110.9	Nup96	576	857	1.80E-71

Protein Sequence

>GWHPAAZE017561
MGIEVGTFEPLSQSQYKKRKVIPNGQCSFPALPALCDMEASLPTLRSSDYFMEPCFDELATREIIDPGYCSRVENFTVGRPGYGCVKFTGETDIRWLDLDRIIKFSRHEIVVYEDENAKPAVGKGLNKAAEVTLVLQIKFSTDYREEQISEVVDKLRLCTEQQGADFISFDPSNGEWKFSVRHFSRFGLGEDEEEDITMDDMASEVQDPVELDGSEVSDIDEETAIVDPVMLSHSLPAHLGLDPAKMREMRMLMFPGEEEEPEEFNVTLSHNRIPFNKESKISPLQHSSRTVHRSSPPLTRKTPLALLEYNPGSFNSSSPGSILMAPQNKTLPLKTTKTEGFKLELRHETPVTRNHSRNIVDAALFMGRSFRVGWGPNGVLVHTGAPVGSRNPQRVLSSAINLEKVAIDKVVRDGNNKVREELIDSCFGFPLNLHKELNYEMKEVGDGHFKLKLRKLGCNRSTLSEVCRGYIGIIESQLEVPGLSSYARVVLMHQVMVWELIKVLFSSREISGQSKSVGAEIEEDMMHDRKESSQEFDPEALPLIRRAEFSYWLQESVCHRVQEEVSSLNESNDLEHILLLLTGRQLDTAVEVAASRGDVRLACLLSQAGGSPANRSDITRQLDLWRLNGLDFSFIEKDRIRLLELLAGDIHGAMQDVKVDWKRFLGVLMWYQLPPDTSLPIVFHKYQQLLQDGSAPYPVPVYIDEGPVEEVVNWSPGQCFDLAYYLMLLHACEESKFGALKTMFSAFASTHDPLDYHMIWHQRAVLEAVGTFSSNDLHVLDMGLVSQLLCLGQCHWAIYVVLNMPHREDYPSLQANVIREILFQYSETWSNKESQRQFIEELGIPSAWLHEALAVYSIYYGDHSKALENFLECSNWQKAHSVFVTSVFHSMFLSGKHSEIWRLATSMEDHKSEIEDWDLGAGIYISFYLLRSSLQEDSNTMTELDTLENKNDACTDFLGRLNQSLAVWANKLPADARVAYSRMAEEICILLVADSGEGSTREVQLSCYNTIFSAPIPEDIRSCHLQDAVSLFTSYLSEAAL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14297	NUP98, ADAR2, NUP116	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0006913	biological_process	nucleocytoplasmic transport
GO:0005643	cellular_component	nuclear pore
GO:0017056	molecular_function	structural constituent of nuclear pore

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.483
	SRR3591706	second leaf	10.874
	SRR3591707	mature leaf	13.473
	SRR3591708	Shoot apex	19.759
	SRR3591709	Stem	16.305
	SRR3591710	White floral bud	17.291
	SRR3591711	White flower	19.593
	SRR3591712	Green floral bud	20.339
	SRR3591713	Yellow flower	13.960
SRP173429	SRR8316895	Juvenile bud stage	15.608
	SRR8316896	Juvenile bud stage	20.145
	SRR8316897	Juvenile bud stage	9.518
	SRR8316894	Third green stage	8.292
	SRR8316900	Third green stage	23.304
	SRR8316901	Third green stage	21.194
	SRR8316898	Complete white stage	6.086
	SRR8316899	Complete white stage	23.583
	SRR8316903	Complete white stage	14.025
	SRR8316902	Silver flowering stage	6.775
	SRR8316904	Silver flowering stage	12.041
	SRR8316905	Silver flowering stage	4.905
	SRR8316906	Gold flowering stage	17.544
	SRR8316907	Gold flowering stage	17.069
	SRR8316908	Gold flowering stage	17.072
SRP132670	SRR6706286	Control	15.523
	SRR6706287	Light intensity 50%	16.355
	SRR6706288	Light intensity 20%	17.126
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.581
	CNS0095593	Slightly white alabastrum(diploid) 2	9.604
	CNS0095594	Slightly white alabastrum(diploid) 3	10.376
	CNS0095595	Whole white alabastrum(diploid) 2	10.402
	CNS0095596	Whole white alabastrum(diploid) 3	10.462
	CNS0095597	Whole white alabastrum(diploid) 4	10.105
	CNS0095598	Silvery flower (diploied) 1	16.035
	CNS0095599	Silvery flower (diploied) 2	11.826
	CNS0095600	Silvery flower (diploied) 3	19.961
	CNS0095601	Golden flower (diploid) 1	11.125
	CNS0095602	Golden flower (diploid) 2	22.070
	CNS0095603	Golden flower (diploid) 3	20.032
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.054
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.601
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.133
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.074
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.465
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.440
	CNS0095610	Silvery flower (tetraploid) 1	21.742
	CNS0095611	Silvery flower (tetraploid) 2	22.656
	CNS0095612	Silvery flower (tetraploid) 3	16.720
	CNS0095613	Golden flower (tetraploid) 1	9.133
	CNS0095614	Golden flower (tetraploid) 2	18.638
	CNS0095615	Golden flower (tetraploid) 3	13.280
CRA001975	CRR073297	Stem 1	22.843
	CRR073298	Stem 2	20.740
	CRR073299	Stem 3	22.349
	CRR073300	Leaf 1	20.517
	CRR073301	Leaf 2	16.973
	CRR073302	Leaf 3	17.871
	CRR073303	Juvenile bud 1	15.884
	CRR073304	Juvenile bud 2	14.462
	CRR073305	Juvenile bud 3	23.624
	CRR073306	Third green 1	5.307
	CRR073307	Third green 2	4.481
	CRR073308	Third green 3	7.763
	CRR073309	Second white 1	10.672
	CRR073310	Second white 2	10.777
	CRR073311	Second white 3	13.380
	CRR073312	Silver flowering 1	11.400
	CRR073313	Silver flowering 2	8.086
	CRR073314	Silver flowering 3	7.308
	CRR073315	Gold flowering 1	15.122
	CRR073316	Gold flowering 2	22.595
	CRR073317	Gold flowering 3	17.690
	CRR073318	Tawny withering 1	15.585
	CRR073319	Tawny withering 2	11.181
	CRR073320	Tawny withering 3	15.386