Gene detail

Detail information of GWHGAAZE017549

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_004303259.1	PREDICTED: ATPase 9, plasma membrane-type-like [Fragaria vesca subsp. vesca]
Swissprot	tr\|Q03194\|PMA4_NICPL	Plasma membrane ATPase 4
trEMBL	tr\|A0A068TPR6\|A0A068TPR6_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO98206.1}
TAIR10	AT1G80660.1	H(+)-ATPase 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	7821533	7825897	-
GWHAAZE00000005	mRNA	7821533	7825897	-
GWHAAZE00000005	exon	7821533	7821629	-
GWHAAZE00000005	exon	7821731	7821912	-
GWHAAZE00000005	exon	7821992	7822174	-
GWHAAZE00000005	exon	7822258	7822431	-
GWHAAZE00000005	exon	7822523	7823037	-
GWHAAZE00000005	exon	7823286	7823515	-
GWHAAZE00000005	exon	7823596	7823822	-
GWHAAZE00000005	exon	7824152	7824598	-
GWHAAZE00000005	exon	7824694	7825008	-
GWHAAZE00000005	exon	7825268	7825405	-
GWHAAZE00000005	exon	7825579	7825749	-
GWHAAZE00000005	exon	7825841	7825897	-
GWHAAZE00000005	CDS	7825841	7825897	-
GWHAAZE00000005	CDS	7825579	7825749	-
GWHAAZE00000005	CDS	7825268	7825405	-
GWHAAZE00000005	CDS	7824694	7825008	-
GWHAAZE00000005	CDS	7824152	7824598	-
GWHAAZE00000005	CDS	7823596	7823822	-
GWHAAZE00000005	CDS	7823286	7823515	-
GWHAAZE00000005	CDS	7822523	7823037	-
GWHAAZE00000005	CDS	7822258	7822431	-
GWHAAZE00000005	CDS	7821992	7822174	-
GWHAAZE00000005	CDS	7821731	7821912	-
GWHAAZE00000005	CDS	7821533	7821629	-

Transcript Sequence
>GWHTAAZE017569 ATGGCGGAGAACAAAGCAAGCAGTTTGGAAGAAATCAAGAAAGAGAACGTCGATCTTGAGAAAGTACCATTGGAAGAAGTGTTTGAGCAATTGAAGTGTACGAAAGAGGGATTAAGCAATGCTGAAGGTGAAGAAAGGCTACAAATATTTGGGCCGAACAAGCTTGAGGAGAAAGAGGAAAGCAAATTCCTCAAATTCTTGGGGTTTATGTGGAATCCATTGTCATGGGGGAAGCCACCGGATTGGCAAGATTTCGTTGGTATTGTTGCATTACTTATTATCAACTCTACCATTAGTTTTATTGAAGAAAATAACGCAGGCAATGCAGCCGCAGCTTTAATGGCAGGTCTTGCTCCTAAAACAAAGGTATTGAGAGATGGTAAATGGAGTGAGCAAGAAGCAGCAATTTTGGTGCCTGGAGACATTATAAGCATCAAGTTGGGAGATATTGTCCCTGCAGATGCTCGTCTCCTCGAAGGAGACCCTCTCAAGATTGACCAATCTGCCCTCACCGGTGAGTCACTCCCCGTAACAAAACACCCGGGCCAAGAGGTCTTTTCTGGTTCAACCTGCAAACAAGGTGAGATTGAGGCCATTGTCATTGCCACCGGTGTCCACACCTTCTTCGGCAAGGCTGCTCACCTCGTGGACAGCACTAATCAAGTCGGCCACTTCCAAAAGGTGTTGACGGCCATCGGTAACTTCTGCATATGCTCCATTGCTGTGGGGATTGTTGTGGAGGTAGTGGTGATGTACCCGATTCAACACCGCAGGTACAGGGACGGAATTGACAATCTTTTGGTCCTTCTCATTGGAGGCATTCCAATTGCTATGCCAACTGTGTTATCGGTCACAATGGCTATCGGGTCCCACAGGCTCTCGCAGCAAGGAGCTATCACCAAAAGGATGACAGCTATCGAAGAAATGGCCGGCATGGATGTCCTTTGCAGTGACAAGACTGGGACCCTCACCCTCAACAAGCTCACCGTGGACAAATCCCTCATCGAAGTCTTTGCTAAAGATGTTGATAAGGAATCTGTGATTCTTTATGGCGCTAGGGCTTCGAGGGTTGAGAATCAAGATGCTATAGATGCTTGTATTGTTGGAATGCTAGGCGATCCCAAGGAGGCCAGAGCTGGGATAACAGAGGTCCATTTCTTGCCCTTTAACCCAGTCGACAAGCGTACAGCCATTACGTACATCGACTCCAGTGGCAACTGGTACCGAGTTAGCAAAGGTGCACCGGAGCAAATCATTGACCTTTGCAACCTCAAGCCAGACATAAAGAGCAAAGCGCTCTCTATCATTGACCAGTTTGCTGAACGCGGTCTTCGTTCTCTAGCCGTAGCTCAACAGCATGATAGTGCCGAAACCATTCGACGTGCCCTCCACCTCGGTGTCAATGTTAAAATGATTACTGGTGACCAGCTTGCCATTGGAAAGGAAACCGGCCGTAGGCTTGGAATGGGAACCAACATGTACCCCTCTTCGTCACTTCTTGGCCAGCACAAGGATGAAGCTATTGCTAACATCCCCATTGAGGAACTCATAGAGAAGGCTGATGGCTTTGCTGGCGTCTTCCCTGAGCACAAGTATGAGATTGTGAAGAAGCTACAAGAGAGAAACCACATTTGCGGGATGACAGGTGATGGCGTGAATGATGCCCCAGCATTAAAGAAGGCTGACATCGGCATTGCGGTGGCCGATGCAACTGATGCTGCTCGGAGCGCATCTGACATAGTCTTGACTGAGCCAGGGCTGAGTGTGATTGTAAGTGCAGTCCTAACAAGCAGAGCCATTTTCCAAAGGATGAAGAACTACACCATCTACGCGGTTTCCATCACGATCCGTATCGTTCTTGGCTTCATGCTCATCGCGCTCATTTGGCAGTTTGACTTCTCGCCTTTCATGGTTCTCATCATCGCCATCCTGAATGACGGTACAATCATGACCATTTCCAAAGACAAAGTGAAGCCCTCCCCCGTCCCTGACTCGTGGAAGCTCAAGGAGATTTTTGCCACTGGCATTGTCCTCGGCACTTACCTCGCAACCATGACCGTGATTTTCTTCTGGGCTGCTCAAGAATCTGACTTTTTCCCCGAAAAATTTGGAGTACACTCGATTAGGAACAACACTGATGAGCTAACTGCGGCTCTTTACCTCCAAGTCAGTATTGTGAGTCAGGCACTCATCTTTGTTACCCGGTCTAGGAGCTGGTCCTTCGTTGAACGCCCTGGTCTTCTACTTGTGATTGCTTTCATTCTTGCACAGTTGGTGGCCACATTGATTGCGGTCTATGCAAATTGGGGCTTTGCGAGAATCAAAGGTGTAGGATGGGGATGGGCCGGTGTTATCTGGATCTACAGCATAATCTTCTATATTCCTCTGGATATCTTCAAGTTCATTATTCGATATGCATTGACAGGCAAAGCCTGGGATAATCTTCTCCAGAATAAGACTGCTTTCACAACTAAGAAAGATTATGGACGAGGTGAGAGAGAGGCGCAGTGGGCTACTGCTCAACGAACCCTTCACGGCCTTCAGCCTGCAGATACCTCAGAGCTCTTCAATGACAAGAACAGCTACAGGGAATTATCTGAAATCGCTGAGCAAGCCAAGAGACGTGCTGAAGTTGCTAGGCTGAGGGAGCTTCATACACTCAAGGGCCATTTTGAATCGGTGGTGAAGCTCAAGGGACTTGACATTGAGACCATTCAACAACATTACACAGTTTGA

Network for GWHGAAZE017549

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00690.27	Cation_ATPase_N	21	75	3.20E-11
PF00122.21	E1-E2_ATPase	118	295	4.00E-48
PF00702.27	Hydrolase	312	562	1.30E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01535	PMA1, PMA2	Metabolic pathways	map01100
K01535	PMA1, PMA2	Oxidative phosphorylation	map00190

Gene Ontology

GO term	Ontology	Name
GO:0120029	biological_process	proton export across plasma membrane
GO:0016021	cellular_component	integral component of membrane
GO:0008553	molecular_function	proton-exporting ATPase activity, phosphorylative mechanism
GO:0000166	molecular_function	nucleotide binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.835
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.030
	SRR3591708	Shoot apex	0.307
	SRR3591709	Stem	0.700
	SRR3591710	White floral bud	6.914
	SRR3591711	White flower	0.615
	SRR3591712	Green floral bud	345.140
	SRR3591713	Yellow flower	0.029
SRP173429	SRR8316895	Juvenile bud stage	55.626
	SRR8316896	Juvenile bud stage	286.941
	SRR8316897	Juvenile bud stage	145.454
	SRR8316894	Third green stage	115.981
	SRR8316900	Third green stage	350.967
	SRR8316901	Third green stage	388.145
	SRR8316898	Complete white stage	0.031
	SRR8316899	Complete white stage	1.197
	SRR8316903	Complete white stage	0.147
	SRR8316902	Silver flowering stage	0.118
	SRR8316904	Silver flowering stage	0.059
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.032
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	171.147
	SRR6706287	Light intensity 50%	153.975
	SRR6706288	Light intensity 20%	138.980
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	345.998
	CNS0095593	Slightly white alabastrum(diploid) 2	240.954
	CNS0095594	Slightly white alabastrum(diploid) 3	417.139
	CNS0095595	Whole white alabastrum(diploid) 2	355.045
	CNS0095596	Whole white alabastrum(diploid) 3	475.494
	CNS0095597	Whole white alabastrum(diploid) 4	352.365
	CNS0095598	Silvery flower (diploied) 1	0.883
	CNS0095599	Silvery flower (diploied) 2	1.142
	CNS0095600	Silvery flower (diploied) 3	0.079
	CNS0095601	Golden flower (diploid) 1	0.641
	CNS0095602	Golden flower (diploid) 2	0.053
	CNS0095603	Golden flower (diploid) 3	0.138
	CNS0095604	Slightly white alabastrum(tetraploid) 1	662.884
	CNS0095605	Slightly white alabastrum(tetraploid) 2	654.723
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.250
	CNS0095607	Whole white alabastrum(tetraploid) 1	820.095
	CNS0095608	Whole white alabastrum(tetraploid) 2	789.102
	CNS0095609	Whole white alabastrum(tetraploid) 3	544.213
	CNS0095610	Silvery flower (tetraploid) 1	0.606
	CNS0095611	Silvery flower (tetraploid) 2	0.604
	CNS0095612	Silvery flower (tetraploid) 3	2.389
	CNS0095613	Golden flower (tetraploid) 1	0.780
	CNS0095614	Golden flower (tetraploid) 2	0.436
	CNS0095615	Golden flower (tetraploid) 3	0.868
CRA001975	CRR073297	Stem 1	121.631
	CRR073298	Stem 2	148.996
	CRR073299	Stem 3	66.798
	CRR073300	Leaf 1	254.981
	CRR073301	Leaf 2	272.908
	CRR073302	Leaf 3	154.201
	CRR073303	Juvenile bud 1	143.062
	CRR073304	Juvenile bud 2	70.795
	CRR073305	Juvenile bud 3	0.305
	CRR073306	Third green 1	1.016
	CRR073307	Third green 2	0.830
	CRR073308	Third green 3	1.046
	CRR073309	Second white 1	0.151
	CRR073310	Second white 2	0.135
	CRR073311	Second white 3	0.244
	CRR073312	Silver flowering 1	1.335
	CRR073313	Silver flowering 2	1.772
	CRR073314	Silver flowering 3	0.474
	CRR073315	Gold flowering 1	0.831
	CRR073316	Gold flowering 2	0.271
	CRR073317	Gold flowering 3	0.536
	CRR073318	Tawny withering 1	1.283
	CRR073319	Tawny withering 2	1.580
	CRR073320	Tawny withering 3	0.851