Gene detail

Detail information of GWHGAAZE017548

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010654871.1	0	PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q0V7T5\|Y1864_ARATH	9E-157	Probable receptor-like protein kinase At1g80640 (Precursor)
trEMBL	tr\|F6HXT5\|F6HXT5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59716.1}
TAIR10	AT2G25220.1	2E-134	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	7791853	7794304	+
GWHAAZE00000005	mRNA	7791853	7794304	+
GWHAAZE00000005	exon	7791853	7791871	+
GWHAAZE00000005	exon	7792285	7792479	+
GWHAAZE00000005	exon	7792573	7792823	+
GWHAAZE00000005	exon	7792916	7793048	+
GWHAAZE00000005	exon	7793126	7793189	+
GWHAAZE00000005	exon	7793293	7793389	+
GWHAAZE00000005	exon	7793502	7793604	+
GWHAAZE00000005	exon	7793744	7793862	+
GWHAAZE00000005	exon	7793968	7794057	+
GWHAAZE00000005	exon	7794155	7794304	+
GWHAAZE00000005	CDS	7791853	7791871	+
GWHAAZE00000005	CDS	7792285	7792479	+
GWHAAZE00000005	CDS	7792573	7792823	+
GWHAAZE00000005	CDS	7792916	7793048	+
GWHAAZE00000005	CDS	7793126	7793189	+
GWHAAZE00000005	CDS	7793293	7793389	+
GWHAAZE00000005	CDS	7793502	7793604	+
GWHAAZE00000005	CDS	7793744	7793862	+
GWHAAZE00000005	CDS	7793968	7794057	+
GWHAAZE00000005	CDS	7794155	7794304	+

Transcript Sequence
>GWHTAAZE017568 ATGGAAGCTCATTCTCCAGTTTTTCAATACTTGGTGAAATCAGGAGTGGCAGAGGTTAGAGTAGTGCACCACAAGGATTTGAACAAGAAAATTCTTATAGCACTCATTGTTGCCTCTACTCTCCTTGGTGGAATTTTGCTGTTGCTATCTTGTTTCTGGATCTATCGACAGAAAAGCTTCAAGACCTTCAATACAAGAAAGCAACAAAGCTTTGATGCTCCAGAAGGGCTCTCATTAGGCCCAATTTTGGACAAATTCAACTCTTTGAGAACATCTGGTAAGAAGGGTGTGGTCTCGGTTCTTGAATATCCATTGTTAGTCGATGCAACAAACAATTTCGACGAAGTAAATATTTTGGGTGATGGCGGTTTTGGATGCGTGTACAAAGCTCAGTTCAATGACAACTTTATTGCTGCCGTGAAAAGACTTCATGGTGGAGGCCAGGATGCTGAGAGAGAATTTGAGAATGAGCTGGACTGGTTGAGTAAAATTCGGCATCAGAATGTGGTTTCCCTTTTGGGGTTCTGCATTCACGACGACATGAGATTTCTGGTCTTTGAAATGATGCATAATGGTTCGTTGGAATCCCAATTGCATGGACCTTCTCATGGGTTAGCTCTAACTTGGCATCTCCGAATGAAAGTTGCATTGGATGTTGCAAGAGGTCTGGAATATCTTCACGAGCGCTGCAACCCTCCTGTGATCCATAGAGATCTCAAATCATCAAACATTCTTCTTGATTCCAACTTCAATGCGAAGCTCTCTGATTTCGGCCTTGCTGTTACTGGTGGGATGCAAAACAAGAACAACATTAAACTGTCCGGAACCTTGGGTTATGTAGCTCCAGAATACCTTCTTGATGGTAAACTAACGGATAAAAGTGATGTATATGCATTTGGAGTTGTTCTTCTGGAGCTTTTAATGGGAAGAAAGCCAGTGGAAAAACTGTCACCATCTCGATGCCAGTCTATTGTCACTTGGGCGATGCCTCAGCTCACTGATAGGTCGAAGCTTCCAACAATTGTGGATCCAATTATAAGAGATACAATGGATCTAAAGCACTTATATCAAGTTGCTGCTGTAGCTGTGTTGTGCGTACAACCGGAACCAAGTTACAGACCGTTGATAACCGACGTATTGCATTCTTTTATTCCACTCGTACCTGTTGAACTTGGGGGGTCACTTAGAGTTGTGGAGACTCCCCCCTCAGCCTGCAATTAA

Network for GWHGAAZE017548

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	117	346	4.90E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-X

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.656
	SRR3591706	second leaf	28.278
	SRR3591707	mature leaf	19.512
	SRR3591708	Shoot apex	20.009
	SRR3591709	Stem	12.065
	SRR3591710	White floral bud	6.159
	SRR3591711	White flower	2.679
	SRR3591712	Green floral bud	10.265
	SRR3591713	Yellow flower	0.281
SRP173429	SRR8316895	Juvenile bud stage	5.360
	SRR8316896	Juvenile bud stage	4.630
	SRR8316897	Juvenile bud stage	3.171
	SRR8316894	Third green stage	3.351
	SRR8316900	Third green stage	7.305
	SRR8316901	Third green stage	5.121
	SRR8316898	Complete white stage	2.676
	SRR8316899	Complete white stage	11.934
	SRR8316903	Complete white stage	4.430
	SRR8316902	Silver flowering stage	1.514
	SRR8316904	Silver flowering stage	2.275
	SRR8316905	Silver flowering stage	0.675
	SRR8316906	Gold flowering stage	0.988
	SRR8316907	Gold flowering stage	0.828
	SRR8316908	Gold flowering stage	0.841
SRP132670	SRR6706286	Control	4.429
	SRR6706287	Light intensity 50%	5.415
	SRR6706288	Light intensity 20%	6.723
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.601
	CNS0095593	Slightly white alabastrum(diploid) 2	4.970
	CNS0095594	Slightly white alabastrum(diploid) 3	4.226
	CNS0095595	Whole white alabastrum(diploid) 2	4.160
	CNS0095596	Whole white alabastrum(diploid) 3	3.734
	CNS0095597	Whole white alabastrum(diploid) 4	4.521
	CNS0095598	Silvery flower (diploied) 1	5.548
	CNS0095599	Silvery flower (diploied) 2	2.742
	CNS0095600	Silvery flower (diploied) 3	4.843
	CNS0095601	Golden flower (diploid) 1	2.366
	CNS0095602	Golden flower (diploid) 2	3.753
	CNS0095603	Golden flower (diploid) 3	2.927
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.219
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.287
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.315
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.294
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.632
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.754
	CNS0095610	Silvery flower (tetraploid) 1	0.547
	CNS0095611	Silvery flower (tetraploid) 2	0.858
	CNS0095612	Silvery flower (tetraploid) 3	0.421
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.647
	CNS0095615	Golden flower (tetraploid) 3	0.101
CRA001975	CRR073297	Stem 1	10.292
	CRR073298	Stem 2	7.322
	CRR073299	Stem 3	8.818
	CRR073300	Leaf 1	7.761
	CRR073301	Leaf 2	6.409
	CRR073302	Leaf 3	5.948
	CRR073303	Juvenile bud 1	6.520
	CRR073304	Juvenile bud 2	3.075
	CRR073305	Juvenile bud 3	5.718
	CRR073306	Third green 1	1.266
	CRR073307	Third green 2	1.217
	CRR073308	Third green 3	1.469
	CRR073309	Second white 1	3.033
	CRR073310	Second white 2	2.294
	CRR073311	Second white 3	2.088
	CRR073312	Silver flowering 1	1.798
	CRR073313	Silver flowering 2	0.880
	CRR073314	Silver flowering 3	2.086
	CRR073315	Gold flowering 1	6.512
	CRR073316	Gold flowering 2	6.762
	CRR073317	Gold flowering 3	5.805
	CRR073318	Tawny withering 1	18.527
	CRR073319	Tawny withering 2	7.380
	CRR073320	Tawny withering 3	21.438