Detail information of GWHGAAZE017528


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP37053.10hypothetical protein JCGZ_06109 [Jatropha curcas]
Swissprottr|O80358|FPG_ARATH7E-169Formamidopyrimidine-DNA glycosylase
trEMBLtr|A0A067KPV9|A0A067KPV9_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP37053.1}
TAIR10AT1G52500.23E-134MUTM homolog-1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene74879467494918-
GWHAAZE00000005mRNA74879467494918-
GWHAAZE00000005exon74879467488452-
GWHAAZE00000005exon74887457488779-
GWHAAZE00000005exon74894877489589-
GWHAAZE00000005exon74898857489962-
GWHAAZE00000005exon74907707490820-
GWHAAZE00000005exon74911497491274-
GWHAAZE00000005exon74913687491436-
GWHAAZE00000005exon74925607492617-
GWHAAZE00000005exon74937787493829-
GWHAAZE00000005exon74946157494918-
GWHAAZE00000005CDS74946157494918-
GWHAAZE00000005CDS74937787493829-
GWHAAZE00000005CDS74925607492617-
GWHAAZE00000005CDS74913687491436-
GWHAAZE00000005CDS74911497491274-
GWHAAZE00000005CDS74907707490820-
GWHAAZE00000005CDS74898857489962-
GWHAAZE00000005CDS74894877489589-
GWHAAZE00000005CDS74887457488779-
GWHAAZE00000005CDS74879467488452-
Transcript Sequence

Network for GWHGAAZE017528

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01149.25Fapy_DNA_glyco11565.50E-28
PF06831.15H2TH1712612.50E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10563mutM, fpg Base excision repair map03410

Gene Ontology

GO term OntologyName
GO:0006281biological_processDNA repair
GO:0006289biological_processnucleotide-excision repair
GO:0006284biological_processbase-excision repair
GO:0003676molecular_functionnucleic acid binding
GO:0003906molecular_functionDNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0008270molecular_functionzinc ion binding
GO:0008534molecular_functionoxidized purine nucleobase lesion DNA N-glycosylase activity
GO:0003684molecular_functiondamaged DNA binding
GO:0016799molecular_functionhydrolase activity, hydrolyzing N-glycosyl compounds

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf63.309
SRR3591706second leaf21.686
SRR3591707mature leaf59.970
SRR3591708Shoot apex51.275
SRR3591709Stem117.632
SRR3591710White floral bud45.773
SRR3591711White flower64.889
SRR3591712Green floral bud45.804
SRR3591713Yellow flower20.935
SRP173429 SRR8316895Juvenile bud stage 51.624
SRR8316896Juvenile bud stage 67.063
SRR8316897Juvenile bud stage 36.320
SRR8316894Third green stage 27.629
SRR8316900Third green stage 70.710
SRR8316901Third green stage 55.790
SRR8316898Complete white stage 20.549
SRR8316899Complete white stage 83.875
SRR8316903Complete white stage 45.346
SRR8316902Silver flowering stage45.823
SRR8316904Silver flowering stage43.813
SRR8316905Silver flowering stage15.124
SRR8316906Gold flowering stage 41.285
SRR8316907Gold flowering stage 49.143
SRR8316908Gold flowering stage 46.715
SRP132670SRR6706286Control43.454
SRR6706287Light intensity 50%42.378
SRR6706288Light intensity 20%38.054
CNP0000432CNS0095592Slightly white alabastrum(diploid) 189.969
CNS0095593Slightly white alabastrum(diploid) 296.080
CNS0095594Slightly white alabastrum(diploid) 394.448
CNS0095595Whole white alabastrum(diploid) 274.954
CNS0095596Whole white alabastrum(diploid) 348.908
CNS0095597Whole white alabastrum(diploid) 466.881
CNS0095598Silvery flower (diploied) 194.954
CNS0095599Silvery flower (diploied) 281.317
CNS0095600Silvery flower (diploied) 333.159
CNS0095601Golden flower (diploid) 164.190
CNS0095602Golden flower (diploid) 224.331
CNS0095603Golden flower (diploid) 323.054
CNS0095604Slightly white alabastrum(tetraploid) 172.031
CNS0095605Slightly white alabastrum(tetraploid) 270.628
CNS0095606Slightly white alabastrum(tetraploid) 382.444
CNS0095607Whole white alabastrum(tetraploid) 162.856
CNS0095608Whole white alabastrum(tetraploid) 244.520
CNS0095609Whole white alabastrum(tetraploid) 345.317
CNS0095610Silvery flower (tetraploid) 175.337
CNS0095611Silvery flower (tetraploid) 236.319
CNS0095612Silvery flower (tetraploid) 331.483
CNS0095613Golden flower (tetraploid) 120.820
CNS0095614Golden flower (tetraploid) 229.141
CNS0095615Golden flower (tetraploid) 312.452
CRA001975CRR073297Stem 167.079
CRR073298Stem 270.445
CRR073299Stem 324.750
CRR073300Leaf 173.675
CRR073301Leaf 280.132
CRR073302Leaf 319.474
CRR073303Juvenile bud 130.428
CRR073304Juvenile bud 212.156
CRR073305Juvenile bud 337.935
CRR073306Third green 15.016
CRR073307Third green 25.637
CRR073308Third green 310.379
CRR073309Second white 13.129
CRR073310Second white 26.270
CRR073311Second white 35.072
CRR073312Silver flowering 10.982
CRR073313Silver flowering 22.279
CRR073314Silver flowering 31.522
CRR073315Gold flowering 131.314
CRR073316Gold flowering 254.339
CRR073317Gold flowering 316.039
CRR073318Tawny withering 157.281
CRR073319Tawny withering 2105.329
CRR073320Tawny withering 361.969