Gene detail

Detail information of GWHGAAZE017523

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006373975.1	hypothetical protein POPTR_0016s12030g [Populus trichocarpa]
Swissprot	tr\|P49972\|SR542_SOLLC	Signal recognition particle 54 kDa protein 2
trEMBL	tr\|U5FQY9\|U5FQY9_POPTR	Uncharacterized protein {ECO:0000313\|EMBL:ERP51772.1}
TAIR10	AT1G48900.1	Signal recognition particle, SRP54 subunit protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	7431690	7438307	+
GWHAAZE00000005	mRNA	7431690	7438307	+
GWHAAZE00000005	exon	7431690	7431872	+
GWHAAZE00000005	exon	7435418	7435517	+
GWHAAZE00000005	exon	7435911	7436064	+
GWHAAZE00000005	exon	7436690	7436840	+
GWHAAZE00000005	exon	7436925	7437073	+
GWHAAZE00000005	exon	7437281	7437381	+
GWHAAZE00000005	exon	7437512	7437669	+
GWHAAZE00000005	exon	7437775	7437910	+
GWHAAZE00000005	exon	7437979	7438307	+
GWHAAZE00000005	CDS	7431690	7431872	+
GWHAAZE00000005	CDS	7435418	7435517	+
GWHAAZE00000005	CDS	7435911	7436064	+
GWHAAZE00000005	CDS	7436690	7436840	+
GWHAAZE00000005	CDS	7436925	7437073	+
GWHAAZE00000005	CDS	7437281	7437381	+
GWHAAZE00000005	CDS	7437512	7437669	+
GWHAAZE00000005	CDS	7437775	7437910	+
GWHAAZE00000005	CDS	7437979	7438307	+

Transcript Sequence
>GWHTAAZE017543 ATGAGCAATGCGACGATCATAGACGAGAAGGTTCTGAATGAATGTCTTAATGAAATCACCCGTGCTCTTCTCCAGTCCGATGTTCAGTTCAAGCTCGTTCGTGATATGCAAACCAATATTAAGAAAATCGTCAATCTCGACGATCTCGCTGCCGGTCACAACAAGCGTAAAATTATTCAACAGGCTATATTTAATGAGCTCTGCAAGATGTTGGATCCTGGGAAGACATCTTTCACCCCAAAGAAAGGGAAAACAAGTGTTGTCATGTTTGTAGGTTTGCAAGGTTCCGGGAAAACAACAACATGTACAAAATATGCGTATTATCACCAGAAGAAGGGCTGGAAACCTGCTCTGGTATGTGCGGATACATTCAGAGCTGGTGCTTTTGATCAGTTGAAGCAGAATGCCACTAAAGCGAAGATTCCATTTTATGGAAGCTACATGGAATCAGATCCGGTGAAAATTGCCGTGGAAGGTGTAGAAAGATTCAAGAAGGAGAACTGTGATCTCATAATAGTTGACACCAGTGGGCGCCACAAACAGGAAACTGCTCTCTTCGAAGAAATGCGCCAAGTGTCTGAAGCAACGAAACCAGACCTTGTTATATTTGTTATGGATAGCAGTATCGGTCAAGCTGCATTTGATCAAGCTCAAGCATTTAAACAAAGTGTAGCAGTTGGAGCCGTGATTGTTACTAAGATGGACGGTCATGCAAAGGGAGGTGGCGCTCTTAGTGCAGTTGCAGCAACGAAGAGTCCTGTCATATTTATTGGAACTGGAGAGCATATGGATGAGTTTGAAGTTTTTGATGTTAAGCCATTTGTGAGCCGTCTTTTAGGTATGGGTGATTTGTCTGGATTCATGGAGAAAATTCACGAAGTTGTTCCTATGGATCAACATCCCGAACTTCTGCAAAAGCTTTCGGAAGGAAACTTCACCTTGCGGATTATGTATGAGCAATTTCAGAACATTCTCAAAATGGGTCCTATTGGCCAGGTTTTTTCAATGCTTCCTGGATTTAGTGCTGAGTTAATGCCCAAAGGCAGGGATAATGAAAGCCAGGCAAAGATCAAACGTTACATGACTATGATGGATTCAATGACTAATGAAGGCAAGTGCGATATTTTTATCGAGTTGGATAGTTCCAACCCAAAGCTGATGAACGAGTCTCGAATAATGAGAATAGCAAGGGGATCTGGCCGGCAAGTGAGGGACGTGATGGAAATGTTGGAAGAGTACAAACGACTGGCAAAGATATGGAGCAAGATGAAGGGTCTTAAGATTCCAAAGAAGGGAGAGATGAGCGCGTTATCAAGAAACATGAATGCCCAACACATGAGCAAAGTACTTCCACCACAGATGCTGAAGCAGATTGGTGGAATGGGCGGCTTACAAAACCTTATGAAGCAAATGGGTTCTACTAAAGACATGATGGGAATGTTTGGTGGTGCGGATAAGTAG

Network for GWHGAAZE017523

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02881.20	SRP54_N	3	67	2.00E-11
PF00448.23	SRP54	86	280	3.00E-78
PF02978.20	SRP_SPB	311	418	2.90E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03106	SRP54, ffh	Protein export	map03060
		Bacterial secretion system	map03070
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name
GO:0006614	biological_process	SRP-dependent cotranslational protein targeting to membrane
GO:0048500	cellular_component	signal recognition particle
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding
GO:0008312	molecular_function	7S RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.747
	SRR3591706	second leaf	9.142
	SRR3591707	mature leaf	14.794
	SRR3591708	Shoot apex	10.436
	SRR3591709	Stem	16.381
	SRR3591710	White floral bud	10.281
	SRR3591711	White flower	6.576
	SRR3591712	Green floral bud	14.032
	SRR3591713	Yellow flower	5.507
SRP173429	SRR8316895	Juvenile bud stage	4.780
	SRR8316896	Juvenile bud stage	9.043
	SRR8316897	Juvenile bud stage	4.425
	SRR8316894	Third green stage	3.126
	SRR8316900	Third green stage	11.133
	SRR8316901	Third green stage	8.898
	SRR8316898	Complete white stage	5.536
	SRR8316899	Complete white stage	5.253
	SRR8316903	Complete white stage	9.066
	SRR8316902	Silver flowering stage	2.945
	SRR8316904	Silver flowering stage	5.052
	SRR8316905	Silver flowering stage	2.245
	SRR8316906	Gold flowering stage	5.036
	SRR8316907	Gold flowering stage	5.545
	SRR8316908	Gold flowering stage	4.928
SRP132670	SRR6706286	Control	6.718
	SRR6706287	Light intensity 50%	7.318
	SRR6706288	Light intensity 20%	6.796
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.758
	CNS0095593	Slightly white alabastrum(diploid) 2	7.844
	CNS0095594	Slightly white alabastrum(diploid) 3	11.512
	CNS0095595	Whole white alabastrum(diploid) 2	7.650
	CNS0095596	Whole white alabastrum(diploid) 3	7.047
	CNS0095597	Whole white alabastrum(diploid) 4	7.200
	CNS0095598	Silvery flower (diploied) 1	5.205
	CNS0095599	Silvery flower (diploied) 2	3.120
	CNS0095600	Silvery flower (diploied) 3	7.935
	CNS0095601	Golden flower (diploid) 1	4.331
	CNS0095602	Golden flower (diploid) 2	5.090
	CNS0095603	Golden flower (diploid) 3	5.071
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.742
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.715
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.311
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.774
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.997
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.882
	CNS0095610	Silvery flower (tetraploid) 1	9.727
	CNS0095611	Silvery flower (tetraploid) 2	10.436
	CNS0095612	Silvery flower (tetraploid) 3	18.441
	CNS0095613	Golden flower (tetraploid) 1	6.990
	CNS0095614	Golden flower (tetraploid) 2	7.485
	CNS0095615	Golden flower (tetraploid) 3	5.524
CRA001975	CRR073297	Stem 1	9.254
	CRR073298	Stem 2	8.904
	CRR073299	Stem 3	8.162
	CRR073300	Leaf 1	7.807
	CRR073301	Leaf 2	8.944
	CRR073302	Leaf 3	6.279
	CRR073303	Juvenile bud 1	5.917
	CRR073304	Juvenile bud 2	6.298
	CRR073305	Juvenile bud 3	6.249
	CRR073306	Third green 1	7.674
	CRR073307	Third green 2	6.128
	CRR073308	Third green 3	6.327
	CRR073309	Second white 1	7.894
	CRR073310	Second white 2	8.869
	CRR073311	Second white 3	5.352
	CRR073312	Silver flowering 1	4.469
	CRR073313	Silver flowering 2	4.867
	CRR073314	Silver flowering 3	3.703
	CRR073315	Gold flowering 1	5.116
	CRR073316	Gold flowering 2	4.937
	CRR073317	Gold flowering 3	3.277
	CRR073318	Tawny withering 1	6.067
	CRR073319	Tawny withering 2	3.676
	CRR073320	Tawny withering 3	6.385