Gene detail

Detail information of GWHGAAZE017516

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003632763.2	0	PREDICTED: E3 ubiquitin-protein ligase KEG isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9FY48\|KEG_ARATH	7E-33	E3 ubiquitin-protein ligase KEG
trEMBL	tr\|F6HXE8\|F6HXE8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59618.1}
TAIR10	AT4G32250.3	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	7335124	7339457	+
GWHAAZE00000005	mRNA	7335124	7339457	+
GWHAAZE00000005	exon	7335124	7335489	+
GWHAAZE00000005	exon	7335592	7335683	+
GWHAAZE00000005	exon	7335967	7336440	+
GWHAAZE00000005	exon	7336982	7337053	+
GWHAAZE00000005	exon	7338218	7339457	+
GWHAAZE00000005	CDS	7335124	7335489	+
GWHAAZE00000005	CDS	7335592	7335683	+
GWHAAZE00000005	CDS	7335967	7336440	+
GWHAAZE00000005	CDS	7336982	7337053	+
GWHAAZE00000005	CDS	7338218	7339181	+
GWHAAZE00000005	three_prime_UTR	7339182	7339457	+

Transcript Sequence
>GWHTAAZE017536 ATGACCGAAGAGGTTGGAGCAGCTGCACAGGCACCTTCTTTTGATTACGAGCTCTATGAAGGAGATCCTGATCATCTTAGAACTGTTGTCGCTACGCCTACTCAGACTGGTTACTGGATTGATCCTGCATCATTGAAACTTAAGCATAGGATTGGGCGTGGACCCTTTGGTGACGTCTGGTTAGCAACACACCATCAATCAGGTGATGACTATGATCGTTATCATGAAGTGGCTGTTAAGATGTTACATCCAATAAAGGAGAACCACATGCAAAAGTTATTTGATAAGTTCGAGGAGTTGTTTATGAAGCTTCGACAACTCCAAGGTGTTTGTTGGTTGCATGGTGCCTCAATTATATCTGGAAAGATCTGCATGGCTATGAAATTCTACGAGGGATCAGTGGGCGATCAAATGGCTATCCTGAAAGGAGGAAAACTTCGGCTGCCAGATGTTATGAGGTACGGGATTGAGTTGGCTAAAGGAATTCATGAGTTGCATCTAACTGATCTTCTGGTTCTGAACCTTAAACCAACCAATTTCCTTCTTGATGAGCACAATAAAGTTACACTAGGGGATTTTGGGATCCCATATCTACTTCTTGGGATGCCACTGCCCAATTCGGATTTGACTCTCAGACTTGGAACACCAAACTACATGGCTCCAGAACAATGGGAACCAGAAGTAAGAGGTCCAATAACTTTTGAGACTGATAGTTGGGGGTTTGGGTGCAGCATTATAGAGATGTTGACTGGTGTTCAACCATGGTTTGGGATGTCAGTTGAAGAAATATATCACTTGGTTGTGATAAAGCAAGAAAAACCACAGCTCCCAAGTGGCCTTCCTCCCGTGGTTGAGAATGTTGTTAATGGCTGTTTTGAGTATGATCTCCGAAACCGTCCATTGGTGGCTGATATTTTACATGCATTTGAAAGGCCACTCTTCCTGTCTGATCTTGTAAGAAGGATGACTCTGTCATATGTTAAAATAGACCTGGCAATTGAGAGCTCGCAGAATGCTGTTTATAATGATGGAGAATGGATTGGTCTGGGGAGCAGAATATTTTTAGACAAATCAAATAGCAGCAGCTATTCATCATGGTTCCTCTCAAAAGATCGTCTCCAAGTTGGTGATACAATTCGCTCAAGAAAGGACCTCAACTCCAGCAAACCTCAAACCATGGCTGTAACAGAAGGAGCTGTAGTTGGACTAGAAAAGGACACTGACCGAGACGGATATGTCTCGGTCAAAATCCATGGAATCCACAACCCTCTAAGGTTAAATGTCTCAACACTAGAGAGGGTCACATCTGGTTTAGCAGCAGGGGATTGGGTTTGCTTGATTGAGGAAAGTACAAATCACTCATCCGTGGGTATTCTACATTCTATACAACGGGATGGATTTGTCAACGTTGGCTTCTTAGGACTAGAGACCCTCTGGAAGGGACATTCTTCTCAGCTTCAGATGGCGGTCCCTTATTTTCTGGGCCAATTTGTGAGGTTGAAGGCAAATGTTTTCACTCCACAGTTCGAATGGCCTTATAAAAGGGGCGGTATGTGGGCCACTGGGAGGATTTTACAAATACTCCCAAATGGGTGTTTGGTTGTGAAATTCCCGGGGAGGTTTGCGTTTAAAGATAAACGCAATATCTTCTTGGCAAATCCAGCTGAAGTGGAGCTTATTTCTTTCAATACTTGTCCGAGACTTGTGGATAAGTACCTACACATTGAGGATTTTCACTGGTCTGTGAGGCCACTAGCTGTTGCATTTGGTGTATTTACAGCAATGAAAATTGGCTTGTTTGTTGGACGAAATGTGGGAGCGAGACTGAAGAAGGGGGGCCGAAGGAATCAGATTAGTGGTGATGGGATTAGGCAAGATGGTCAGACTGGTGGCAATTCAAAGTGGCGTCGGTCGAAAGTTGCAAATATGATATTCAGAGAAGGTGCTACCACCGCTGCTGCAAGGTGATGTATCAGCACTCTTTTACTTGGACCATTCTTAGCTGAGTTCTGTATTGAAAAGATGCAGACGAGGTGGAATGGAATTTCTATGTTGTGAAGCTAAGTATGTAAATATATGTTTATAGAATATGACCTTTTTAGTAATGTGGTCCAGGCAGACACTGATGGACTTTCGAAGGGATGTAGATATGGATATGTTTGTAACATTAGTAGTATATGTTTTAAAGTTACTTTATTGATATGCTTTTTATGTGAATATAACTGCAGAATGTTTTATTAAGAA

Network for GWHGAAZE017516

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	45	307	3.00E-30

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.186
	SRR3591706	second leaf	8.070
	SRR3591707	mature leaf	18.227
	SRR3591708	Shoot apex	13.765
	SRR3591709	Stem	22.369
	SRR3591710	White floral bud	13.370
	SRR3591711	White flower	16.049
	SRR3591712	Green floral bud	11.931
	SRR3591713	Yellow flower	14.958
SRP173429	SRR8316895	Juvenile bud stage	5.653
	SRR8316896	Juvenile bud stage	9.628
	SRR8316897	Juvenile bud stage	4.160
	SRR8316894	Third green stage	3.834
	SRR8316900	Third green stage	11.326
	SRR8316901	Third green stage	9.282
	SRR8316898	Complete white stage	3.934
	SRR8316899	Complete white stage	19.820
	SRR8316903	Complete white stage	6.031
	SRR8316902	Silver flowering stage	4.662
	SRR8316904	Silver flowering stage	7.489
	SRR8316905	Silver flowering stage	3.099
	SRR8316906	Gold flowering stage	12.387
	SRR8316907	Gold flowering stage	10.628
	SRR8316908	Gold flowering stage	18.188
SRP132670	SRR6706286	Control	6.455
	SRR6706287	Light intensity 50%	7.304
	SRR6706288	Light intensity 20%	7.700
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.601
	CNS0095593	Slightly white alabastrum(diploid) 2	7.011
	CNS0095594	Slightly white alabastrum(diploid) 3	5.977
	CNS0095595	Whole white alabastrum(diploid) 2	4.781
	CNS0095596	Whole white alabastrum(diploid) 3	4.033
	CNS0095597	Whole white alabastrum(diploid) 4	5.792
	CNS0095598	Silvery flower (diploied) 1	12.756
	CNS0095599	Silvery flower (diploied) 2	10.223
	CNS0095600	Silvery flower (diploied) 3	13.803
	CNS0095601	Golden flower (diploid) 1	13.243
	CNS0095602	Golden flower (diploid) 2	17.300
	CNS0095603	Golden flower (diploid) 3	13.970
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.272
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.172
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.477
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.201
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.245
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.068
	CNS0095610	Silvery flower (tetraploid) 1	28.255
	CNS0095611	Silvery flower (tetraploid) 2	35.091
	CNS0095612	Silvery flower (tetraploid) 3	17.195
	CNS0095613	Golden flower (tetraploid) 1	19.759
	CNS0095614	Golden flower (tetraploid) 2	24.358
	CNS0095615	Golden flower (tetraploid) 3	21.336
CRA001975	CRR073297	Stem 1	9.513
	CRR073298	Stem 2	10.754
	CRR073299	Stem 3	12.191
	CRR073300	Leaf 1	13.856
	CRR073301	Leaf 2	10.996
	CRR073302	Leaf 3	8.307
	CRR073303	Juvenile bud 1	10.787
	CRR073304	Juvenile bud 2	5.786
	CRR073305	Juvenile bud 3	12.816
	CRR073306	Third green 1	1.244
	CRR073307	Third green 2	2.283
	CRR073308	Third green 3	1.127
	CRR073309	Second white 1	3.134
	CRR073310	Second white 2	1.839
	CRR073311	Second white 3	1.567
	CRR073312	Silver flowering 1	1.177
	CRR073313	Silver flowering 2	1.588
	CRR073314	Silver flowering 3	0.598
	CRR073315	Gold flowering 1	13.529
	CRR073316	Gold flowering 2	16.430
	CRR073317	Gold flowering 3	15.608
	CRR073318	Tawny withering 1	9.772
	CRR073319	Tawny withering 2	7.507
	CRR073320	Tawny withering 3	12.448