Detail information of GWHGAAZE017501


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO98145.10unnamed protein product [Coffea canephora]
Swissprottr|Q41142|PLDA1_RICCO0Phospholipase D alpha 1 (Precursor)
trEMBLtr|A0A068TPA0|A0A068TPA0_COFCA0Phospholipase D {ECO:0000256|PIRNR:PIRNR036470}
TAIR10AT3G15730.16E-178phospholipase D alpha 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene71009417103051+
GWHAAZE00000005mRNA71009417103051+
GWHAAZE00000005exon71009417101045+
GWHAAZE00000005exon71020177103051+
GWHAAZE00000005CDS71009417101045+
GWHAAZE00000005CDS71020177103051+
Transcript Sequence

Network for GWHGAAZE017501

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00168.31C2101311.20E-15
PF00614.23PLDc3303681.10E-10
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01115PLD1_2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Glycerophospholipid metabolismmap00564
Ether lipid metabolismmap00565
Ras signaling pathwaymap04014
Phospholipase D signaling pathwaymap04072
Sphingolipid signaling pathwaymap04071
cAMP signaling pathwaymap04024
Endocytosismap04144
Fc gamma R-mediated phagocytosismap04666
GnRH signaling pathwaymap04912
Parathyroid hormone synthesis, secretion and actionmap04928
Glutamatergic synapsemap04724

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.234
SRR3591706second leaf0.300
SRR3591707mature leaf0.000
SRR3591708Shoot apex1.196
SRR3591709Stem0.432
SRR3591710White floral bud2.644
SRR3591711White flower0.359
SRR3591712Green floral bud97.361
SRR3591713Yellow flower0.182
SRP173429 SRR8316895Juvenile bud stage 12.825
SRR8316896Juvenile bud stage 99.495
SRR8316897Juvenile bud stage 58.251
SRR8316894Third green stage 46.205
SRR8316900Third green stage 144.251
SRR8316901Third green stage 141.347
SRR8316898Complete white stage 0.579
SRR8316899Complete white stage 2.744
SRR8316903Complete white stage 0.549
SRR8316902Silver flowering stage0.032
SRR8316904Silver flowering stage0.318
SRR8316905Silver flowering stage0.095
SRR8316906Gold flowering stage 0.082
SRR8316907Gold flowering stage 0.062
SRR8316908Gold flowering stage 0.751
SRP132670SRR6706286Control49.709
SRR6706287Light intensity 50%47.418
SRR6706288Light intensity 20%44.483
CNP0000432CNS0095592Slightly white alabastrum(diploid) 122.362
CNS0095593Slightly white alabastrum(diploid) 210.896
CNS0095594Slightly white alabastrum(diploid) 329.707
CNS0095595Whole white alabastrum(diploid) 215.384
CNS0095596Whole white alabastrum(diploid) 318.728
CNS0095597Whole white alabastrum(diploid) 410.426
CNS0095598Silvery flower (diploied) 10.593
CNS0095599Silvery flower (diploied) 21.539
CNS0095600Silvery flower (diploied) 30.172
CNS0095601Golden flower (diploid) 10.563
CNS0095602Golden flower (diploid) 20.165
CNS0095603Golden flower (diploid) 30.557
CNS0095604Slightly white alabastrum(tetraploid) 180.592
CNS0095605Slightly white alabastrum(tetraploid) 243.737
CNS0095606Slightly white alabastrum(tetraploid) 34.571
CNS0095607Whole white alabastrum(tetraploid) 151.110
CNS0095608Whole white alabastrum(tetraploid) 281.892
CNS0095609Whole white alabastrum(tetraploid) 3177.772
CNS0095610Silvery flower (tetraploid) 10.289
CNS0095611Silvery flower (tetraploid) 20.370
CNS0095612Silvery flower (tetraploid) 31.212
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.098
CNS0095615Golden flower (tetraploid) 30.934
CRA001975CRR073297Stem 117.803
CRR073298Stem 231.078
CRR073299Stem 319.202
CRR073300Leaf 120.467
CRR073301Leaf 231.215
CRR073302Leaf 332.853
CRR073303Juvenile bud 116.778
CRR073304Juvenile bud 214.440
CRR073305Juvenile bud 32.775
CRR073306Third green 10.840
CRR073307Third green 20.612
CRR073308Third green 30.632
CRR073309Second white 10.011
CRR073310Second white 20.000
CRR073311Second white 30.289
CRR073312Silver flowering 10.765
CRR073313Silver flowering 20.614
CRR073314Silver flowering 30.400
CRR073315Gold flowering 10.724
CRR073316Gold flowering 20.284
CRR073317Gold flowering 30.398
CRR073318Tawny withering 10.229
CRR073319Tawny withering 20.862
CRR073320Tawny withering 30.133