Gene detail

Detail information of GWHGAAZE017474

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO98115.1	1.4426E-154	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068TP61\|A0A068TP61_COFCA	5E-155	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO98115.1}
TAIR10	AT3G15650.1	3E-93	alpha/beta-Hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	6810634	6813911	+
GWHAAZE00000005	mRNA	6810634	6813911	+
GWHAAZE00000005	exon	6810634	6810664	+
GWHAAZE00000005	exon	6810878	6810992	+
GWHAAZE00000005	exon	6812395	6812431	+
GWHAAZE00000005	exon	6812549	6812597	+
GWHAAZE00000005	exon	6812707	6812811	+
GWHAAZE00000005	exon	6813124	6813274	+
GWHAAZE00000005	exon	6813430	6813512	+
GWHAAZE00000005	exon	6813611	6813704	+
GWHAAZE00000005	exon	6813827	6813911	+
GWHAAZE00000005	CDS	6810634	6810664	+
GWHAAZE00000005	CDS	6810878	6810992	+
GWHAAZE00000005	CDS	6812395	6812431	+
GWHAAZE00000005	CDS	6812549	6812597	+
GWHAAZE00000005	CDS	6812707	6812811	+
GWHAAZE00000005	CDS	6813124	6813274	+
GWHAAZE00000005	CDS	6813430	6813512	+
GWHAAZE00000005	CDS	6813611	6813704	+
GWHAAZE00000005	CDS	6813827	6813911	+

Transcript Sequence
>GWHTAAZE017494 ATGAGTTATACTAATCCTTCAATGAGTTCTGGCAGTAGAACATCGAGACGGAGCATTGAATTTGGAAGGACATATGTGGTGAGGCCCAAAGGGAAGCACCAAGCCACAATAGTTTGGTTGCATGGCCTTGGTGATAATGGCTCGAGCTCATCTCAGCTCTTGGAAAGCCTTCCTCTTGCTAATATTAAATGGATATGCCCAACTGCTCCTACTCGTCCAGTGGCTCTACTTGGGTTTGACGTGGGTGAACTTTCAGAAGATGGTCCAGATGATATCGAGGGTTTAGATGCTTCAGCAGCACATATTGCAAACTTGTTGTCAACAGAGCCTGCTGGCACTAAACTCGGTATTGGGGGATTTAGTATGGGTGCTGCAACTGCCCTCTATTCTGCAACTTGCTTTGCTTATGGAAAATATGGAAATGGAAACCCTTACTCCGTCAACTTAAGGGCAATTGTTGGTCTAAGTGGCTGGCTTCCCGGCTCAAGGAGCTTGGGAAACAAGATAGAAGGATCACACGAGGCTGCAAGGCGAGCAGCATGCTTGCCCATTTTGCTGTGCCATGGACTCTCTGATGAAGTTGTCCCTTTCAAATACGGAGAGAAGTCCACCCAACTAATGAACTCAGCTGGATTTCGATACCTGACATTCAAAACCTATAATGGGCTAGGCCATTATACAGTGCCAAAGGAGATGGATGAGGTGTGCAATTGGCTAAACACAAGGCTGGGACTCGAGGGGTCGCGCTGA

Network for GWHGAAZE017474

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02230.17	Abhydrolase_2	25	241	6.70E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06130	LYPLA2	Glycerophospholipid metabolism	map00564

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.058
	SRR3591706	second leaf	3.248
	SRR3591707	mature leaf	3.688
	SRR3591708	Shoot apex	1.779
	SRR3591709	Stem	453.617
	SRR3591710	White floral bud	5.696
	SRR3591711	White flower	1.191
	SRR3591712	Green floral bud	2.900
	SRR3591713	Yellow flower	0.404
SRP173429	SRR8316895	Juvenile bud stage	2.066
	SRR8316896	Juvenile bud stage	1.502
	SRR8316897	Juvenile bud stage	1.374
	SRR8316894	Third green stage	1.515
	SRR8316900	Third green stage	3.727
	SRR8316901	Third green stage	1.916
	SRR8316898	Complete white stage	1.695
	SRR8316899	Complete white stage	5.189
	SRR8316903	Complete white stage	2.466
	SRR8316902	Silver flowering stage	3.790
	SRR8316904	Silver flowering stage	3.088
	SRR8316905	Silver flowering stage	1.068
	SRR8316906	Gold flowering stage	2.956
	SRR8316907	Gold flowering stage	1.637
	SRR8316908	Gold flowering stage	2.379
SRP132670	SRR6706286	Control	2.101
	SRR6706287	Light intensity 50%	3.190
	SRR6706288	Light intensity 20%	3.664
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.514
	CNS0095593	Slightly white alabastrum(diploid) 2	2.374
	CNS0095594	Slightly white alabastrum(diploid) 3	2.786
	CNS0095595	Whole white alabastrum(diploid) 2	1.968
	CNS0095596	Whole white alabastrum(diploid) 3	3.323
	CNS0095597	Whole white alabastrum(diploid) 4	3.785
	CNS0095598	Silvery flower (diploied) 1	5.415
	CNS0095599	Silvery flower (diploied) 2	4.346
	CNS0095600	Silvery flower (diploied) 3	1.787
	CNS0095601	Golden flower (diploid) 1	2.045
	CNS0095602	Golden flower (diploid) 2	1.084
	CNS0095603	Golden flower (diploid) 3	0.576
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.970
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.745
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.110
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.105
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.590
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.338
	CNS0095610	Silvery flower (tetraploid) 1	4.393
	CNS0095611	Silvery flower (tetraploid) 2	1.775
	CNS0095612	Silvery flower (tetraploid) 3	2.032
	CNS0095613	Golden flower (tetraploid) 1	0.605
	CNS0095614	Golden flower (tetraploid) 2	2.752
	CNS0095615	Golden flower (tetraploid) 3	0.333
CRA001975	CRR073297	Stem 1	3.507
	CRR073298	Stem 2	2.158
	CRR073299	Stem 3	2.700
	CRR073300	Leaf 1	2.655
	CRR073301	Leaf 2	3.968
	CRR073302	Leaf 3	2.168
	CRR073303	Juvenile bud 1	3.894
	CRR073304	Juvenile bud 2	1.432
	CRR073305	Juvenile bud 3	2.249
	CRR073306	Third green 1	3.508
	CRR073307	Third green 2	3.317
	CRR073308	Third green 3	5.960
	CRR073309	Second white 1	1.345
	CRR073310	Second white 2	0.419
	CRR073311	Second white 3	0.103
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.588
	CRR073316	Gold flowering 2	2.345
	CRR073317	Gold flowering 3	1.239
	CRR073318	Tawny withering 1	18.880
	CRR073319	Tawny withering 2	37.010
	CRR073320	Tawny withering 3	40.653