Gene detail

Detail information of GWHGAAZE017445

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011081001.1	0	PREDICTED: bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase [Sesamum indicum]
Swissprot	tr\|E9L7A5\|PAT_PETHY	1E-35	Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase (Precursor)
trEMBL	tr\|A0A022QBP0\|A0A022QBP0_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU24678.1}
TAIR10	AT1G80360.1	1E-175	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	6393870	6398233	+
GWHAAZE00000005	mRNA	6393870	6398233	+
GWHAAZE00000005	exon	6393870	6393917	+
GWHAAZE00000005	exon	6394026	6394073	+
GWHAAZE00000005	exon	6394746	6394874	+
GWHAAZE00000005	exon	6395029	6395088	+
GWHAAZE00000005	exon	6395557	6395713	+
GWHAAZE00000005	exon	6396299	6396405	+
GWHAAZE00000005	exon	6396594	6396652	+
GWHAAZE00000005	exon	6397329	6397437	+
GWHAAZE00000005	exon	6397727	6398233	+
GWHAAZE00000005	CDS	6393870	6393917	+
GWHAAZE00000005	CDS	6394026	6394073	+
GWHAAZE00000005	CDS	6394746	6394874	+
GWHAAZE00000005	CDS	6395029	6395088	+
GWHAAZE00000005	CDS	6395557	6395713	+
GWHAAZE00000005	CDS	6396299	6396405	+
GWHAAZE00000005	CDS	6396594	6396652	+
GWHAAZE00000005	CDS	6397329	6397437	+
GWHAAZE00000005	CDS	6397727	6398179	+
GWHAAZE00000005	three_prime_UTR	6398180	6398233	+

Transcript Sequence
>GWHTAAZE017465 ATGCTAGCCAGGAGGGCCGTACAAACCGATACACCGGTTATGGTTCAGATACAAGAATTGATCCGGGGGGTTAAAGATGCCGTGTCTTTAGCTCAGGGGGTAGTGTATTGGCAACCACCCAAGCAGGCATTGGAAAAAGTGAAAGAGCTTGTATGGGATCCCTCAATTAGTCGTTATGGTGCTGATGAAGGTCTTCCTGAGCTTAGGGAGGCGTTGATTAAGAAGTTGCATCGAGAAAATAAGTTGTCCAAATCCTCGGTGATGGTTACTGCGGGTGCAAATCAGGCATTTGTGAATATTGTGCTTACATTGTGTGATGCTGGGGACTCCGTAGTTATGTTTGCACCATACTACTTCAATTCATACATGTCTTTCCAGATGACAGGCGTTACTGACATCCTAGTGGGCCCTGGTAGTCCAAATACACTCCATCCAGATGCAGATTGGCTAGAAAAGACTTTACGAGAAACTAAACCAACTCCAAAGCTTGTCACAGTTGTTAATCCTGGTAACCCATCTGGAACCTACATACCAGAACAACTGCTCAAGAGGATATCGGATCTCTGCAGAGATGCTGGATGTTGGCTTGTTGTAGATAATACATACGAGTACTTTATGTATGATGGTCTGAAACATTCATGCCTAGAGGGCAATCACATCGTCAACATTTTTTCCTTCTCTAAAGCTTACGGGATGATGGGATGGCGTGTTGGATATATAGCATATCCTTCAGAAGCGGAGGGATTTGGACCCCAACTCCTTAAAATCCAAGACAACATACCTATATGTGCTTCCATAATCTCCCAACGACTGGCGCTTCACTCGTTAGAAGTGGGACCGGAGTGGGTGACCGATCAAGTAAAAGACCTTGTCAAAAACCGAGCACTTGTTCTAGAAGCACTATCTCCTCTAGGAGAGGGTGCTGTTAAGGGAGGAGAAGGTGCAATTTACCTGTGGGCAAAGCTACCTGAGAAATATGTTGATGACTTTGAAGTAGTTCGTTGGCTGGCTAGGAAACACGGGGTGGTTATAATCCCCGGAAGTGCCTCGGGATGCCCGGGGCACGTTAGGATATCATTTGGAGGTTTGCTGGAGGACGATTGTCGACTGGCATCAGCTAGGCTGAGAAAAGGGTTCGAAGAACTTGTGAGGGATGGGATGGTTGAGTGAGTGTGCTTATGTAAAAACTTCAATTCAATACTTTGAATTTTTAGTTAGGGGGCG

Network for GWHGAAZE017445

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00155.22	Aminotran_1_2	28	368	6.60E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00837	ISS1, VAS1	Metabolic pathways	map01100
		Cysteine and methionine metabolism	map00270
		Tryptophan metabolism	map00380

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0030170	molecular_function	pyridoxal phosphate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	41.897
	SRR3591706	second leaf	37.125
	SRR3591707	mature leaf	55.747
	SRR3591708	Shoot apex	49.962
	SRR3591709	Stem	90.036
	SRR3591710	White floral bud	46.236
	SRR3591711	White flower	54.405
	SRR3591712	Green floral bud	35.237
	SRR3591713	Yellow flower	59.010
SRP173429	SRR8316895	Juvenile bud stage	41.017
	SRR8316896	Juvenile bud stage	78.501
	SRR8316897	Juvenile bud stage	39.360
	SRR8316894	Third green stage	19.345
	SRR8316900	Third green stage	60.354
	SRR8316901	Third green stage	79.140
	SRR8316898	Complete white stage	26.101
	SRR8316899	Complete white stage	58.424
	SRR8316903	Complete white stage	41.248
	SRR8316902	Silver flowering stage	46.534
	SRR8316904	Silver flowering stage	54.192
	SRR8316905	Silver flowering stage	29.130
	SRR8316906	Gold flowering stage	106.520
	SRR8316907	Gold flowering stage	98.492
	SRR8316908	Gold flowering stage	121.825
SRP132670	SRR6706286	Control	50.744
	SRR6706287	Light intensity 50%	50.419
	SRR6706288	Light intensity 20%	50.986
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	57.898
	CNS0095593	Slightly white alabastrum(diploid) 2	51.514
	CNS0095594	Slightly white alabastrum(diploid) 3	65.367
	CNS0095595	Whole white alabastrum(diploid) 2	50.931
	CNS0095596	Whole white alabastrum(diploid) 3	45.108
	CNS0095597	Whole white alabastrum(diploid) 4	52.059
	CNS0095598	Silvery flower (diploied) 1	62.256
	CNS0095599	Silvery flower (diploied) 2	71.054
	CNS0095600	Silvery flower (diploied) 3	81.620
	CNS0095601	Golden flower (diploid) 1	80.781
	CNS0095602	Golden flower (diploid) 2	69.155
	CNS0095603	Golden flower (diploid) 3	67.566
	CNS0095604	Slightly white alabastrum(tetraploid) 1	45.143
	CNS0095605	Slightly white alabastrum(tetraploid) 2	45.038
	CNS0095606	Slightly white alabastrum(tetraploid) 3	46.369
	CNS0095607	Whole white alabastrum(tetraploid) 1	52.234
	CNS0095608	Whole white alabastrum(tetraploid) 2	42.719
	CNS0095609	Whole white alabastrum(tetraploid) 3	53.923
	CNS0095610	Silvery flower (tetraploid) 1	92.208
	CNS0095611	Silvery flower (tetraploid) 2	83.018
	CNS0095612	Silvery flower (tetraploid) 3	127.407
	CNS0095613	Golden flower (tetraploid) 1	86.601
	CNS0095614	Golden flower (tetraploid) 2	83.910
	CNS0095615	Golden flower (tetraploid) 3	83.829
CRA001975	CRR073297	Stem 1	53.021
	CRR073298	Stem 2	53.778
	CRR073299	Stem 3	41.025
	CRR073300	Leaf 1	67.658
	CRR073301	Leaf 2	69.498
	CRR073302	Leaf 3	57.073
	CRR073303	Juvenile bud 1	48.529
	CRR073304	Juvenile bud 2	50.223
	CRR073305	Juvenile bud 3	46.540
	CRR073306	Third green 1	62.006
	CRR073307	Third green 2	37.743
	CRR073308	Third green 3	48.487
	CRR073309	Second white 1	60.449
	CRR073310	Second white 2	70.117
	CRR073311	Second white 3	56.690
	CRR073312	Silver flowering 1	68.259
	CRR073313	Silver flowering 2	58.154
	CRR073314	Silver flowering 3	74.917
	CRR073315	Gold flowering 1	36.076
	CRR073316	Gold flowering 2	45.488
	CRR073317	Gold flowering 3	20.931
	CRR073318	Tawny withering 1	91.271
	CRR073319	Tawny withering 2	127.680
	CRR073320	Tawny withering 3	90.931