Gene detail

Detail information of GWHGAAZE017417

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009773566.1	2.0811E-159	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101 isoform X2 [Nicotiana sylvestris]
Swissprot	tr\|Q9LW83\|CE101_ARATH	6E-123	G-type lectin S-receptor-like serine/threonine-protein kinase CES101 (Precursor)
trEMBL	tr\|K4DBM1\|K4DBM1_SOLLC	1E-154	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}
TAIR10	AT3G16030.1	3E-98	lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	5954350	5957114	-
GWHAAZE00000005	mRNA	5954350	5957114	-
GWHAAZE00000005	exon	5954350	5954630	-
GWHAAZE00000005	exon	5954960	5955201	-
GWHAAZE00000005	exon	5955284	5955368	-
GWHAAZE00000005	exon	5955953	5957114	-
GWHAAZE00000005	CDS	5955953	5957114	-
GWHAAZE00000005	CDS	5955284	5955368	-
GWHAAZE00000005	CDS	5954960	5955201	-
GWHAAZE00000005	CDS	5954350	5954630	-

Transcript Sequence
>GWHTAAZE017437 ATGGCCACCCATTTAAGAACCCTAATTCCAATACTCAATTTCATCTTCTTCTTCTTCAGCATCCCTTGTTACTCAATTACAGATACGATCACACAAGGCCAACAACTAAGGGATTGGGAGCAACTCAATTCAGCGAACAATCTCTTTCGCCTCCAATTCTTTGGCCCTACCACTTCCAAAACTCGTTATTTGGGCATATTTTACAACCTGCCGTCGTCCGATGGAGGTCCAAGCGGCGGTGACGACAAGGCGGTCTGGGTAGCCAACCGGAACACCCCAATTCCCGACGCCTCCGGCAACCTCATGATTGACGTTGACGGAAAGTTGAAAATTTTTTACGCCGGAAGTAATGCAGTCGTAGTGTTCGACTCATTGCCTACAAGAGGTAACACTACTGTGACTCTACTAAATACTGGGAATTTGGTACTGAGTGAGGTGAACGCTAATGGTTCTTCAAATCAGGTGTTGTGGCAAAGCTTTGATTACCCAACAGATACTCTTCTTCCTGGAATGAAACTTGGGATGAATTTGAGAACTGGGCATATATGGTCATTAACCTCTTGGATCAGCGATGAATTGCCTGCTTCAGGGTCTTTTACATTTGGTTTAGACCCAAATCAGACGAGTCAATTAAAAATATGGTGGAGAGGGAATGTGTCATGGATGAGTGGGGTATGGCGCAATGGTCGTTTTGCTAATGCAGCTCGATTGTCTGAAAACTTTACATATGTTTCTAATGAAGATGAGACATACTTTACCTATTCTTTTAGATACAGAAATGGCAGTTTCCCAAGGTACACTATGGATCGAGAGGGTAATATTCTTCAAGAACAAGGAGGGCGAGCACCATTTGGTTATTGTTTCCCCTCTCACGTTGCTGATACTGGATGTGTGGTGGAAAATTCCCCGGAGTGTAGGACAAAGAATTATTGGTTTTTTATACAGAGGCAAGGTGTCATATATGGTGATGGGATTAAGTTTGATGAAAGCAAAAACTACAGTGTCTTTGATTGTCAAGCAATTTGCACGAACGATTGTTCTTGTGTTGCATATGCTTCTACTAGTTATAACAAAACTGGGTGCCAGACTTGGAGAAAAGGCAGGCGTTTCCAAGCAACCACCAACCCTTTGGATCTGGCTTACATGGTTGTTGAAGACAAAGATAGCAACTGGTTGATATGGCTAGGTGTTGGATTGGGGGTTTTCGCTATACTCCTAACATGCTCCATTTGCTATTTCGTACGAAGTTGTATATTTCATATCTATCAATTAGGAAAGACCATAAAGAGGAAGAATAGACGACTTGGGCTGGGAGGTTTATCTTCCAGCGAATACAGTAACATCAATAATCACAACAATGATGAGAATATGGGGGTGGATGTGCATTTGTTCAGCTATGAGAGCATTGCAATCGCCACAAACAATTTTTCTAGCATGAACAAACTCGGAGAGGGTGGCTTTGGACCAGTTTATAAGGTAAACCTTTTGACATTTGTTGTTATTTACGTATCACAACTTTATTGTGAAACAGATCCAAGTAAAAGAGGTTTCCTAAATTGGACGGACCGCTTCAAAATCATTGAAGGGATTGCTCAAGGACTTCTTTACCTCCATAAATATTCAAGACTGAGAGTTATTCACAGAGATCTAAAAGCCAGTAATATCTTACTAGATGACAGCTTCAATCCGAAAATATCAGATTTTGGCATGGCAAGAATATTTGGGATCAACGAAACTGAAGCCAACACAAATAGAGTTGTGGGAACATAG

Network for GWHGAAZE017417

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01453.25	B_lectin	85	188	8.00E-30
PF08276.12	PAN_2	331	366	1.40E-06
PF00069.26	Pkinase	516	589	2.30E-13

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.750
	SRR3591706	second leaf	13.545
	SRR3591707	mature leaf	15.146
	SRR3591708	Shoot apex	13.983
	SRR3591709	Stem	12.947
	SRR3591710	White floral bud	10.509
	SRR3591711	White flower	17.826
	SRR3591712	Green floral bud	10.289
	SRR3591713	Yellow flower	21.943
SRP173429	SRR8316895	Juvenile bud stage	13.228
	SRR8316896	Juvenile bud stage	11.743
	SRR8316897	Juvenile bud stage	11.745
	SRR8316894	Third green stage	5.156
	SRR8316900	Third green stage	7.739
	SRR8316901	Third green stage	8.662
	SRR8316898	Complete white stage	3.057
	SRR8316899	Complete white stage	15.397
	SRR8316903	Complete white stage	4.726
	SRR8316902	Silver flowering stage	5.317
	SRR8316904	Silver flowering stage	8.944
	SRR8316905	Silver flowering stage	5.114
	SRR8316906	Gold flowering stage	21.591
	SRR8316907	Gold flowering stage	14.283
	SRR8316908	Gold flowering stage	23.309
SRP132670	SRR6706286	Control	13.209
	SRR6706287	Light intensity 50%	14.421
	SRR6706288	Light intensity 20%	11.973
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.524
	CNS0095593	Slightly white alabastrum(diploid) 2	6.755
	CNS0095594	Slightly white alabastrum(diploid) 3	8.213
	CNS0095595	Whole white alabastrum(diploid) 2	5.828
	CNS0095596	Whole white alabastrum(diploid) 3	2.874
	CNS0095597	Whole white alabastrum(diploid) 4	5.633
	CNS0095598	Silvery flower (diploied) 1	15.106
	CNS0095599	Silvery flower (diploied) 2	9.904
	CNS0095600	Silvery flower (diploied) 3	15.354
	CNS0095601	Golden flower (diploid) 1	16.307
	CNS0095602	Golden flower (diploid) 2	24.355
	CNS0095603	Golden flower (diploid) 3	22.099
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.222
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.761
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.281
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.875
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.099
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.936
	CNS0095610	Silvery flower (tetraploid) 1	17.757
	CNS0095611	Silvery flower (tetraploid) 2	13.060
	CNS0095612	Silvery flower (tetraploid) 3	7.835
	CNS0095613	Golden flower (tetraploid) 1	8.785
	CNS0095614	Golden flower (tetraploid) 2	18.035
	CNS0095615	Golden flower (tetraploid) 3	13.913
CRA001975	CRR073297	Stem 1	9.131
	CRR073298	Stem 2	7.808
	CRR073299	Stem 3	6.461
	CRR073300	Leaf 1	7.214
	CRR073301	Leaf 2	6.814
	CRR073302	Leaf 3	4.262
	CRR073303	Juvenile bud 1	4.298
	CRR073304	Juvenile bud 2	2.943
	CRR073305	Juvenile bud 3	6.246
	CRR073306	Third green 1	2.795
	CRR073307	Third green 2	1.627
	CRR073308	Third green 3	2.722
	CRR073309	Second white 1	2.027
	CRR073310	Second white 2	3.394
	CRR073311	Second white 3	2.556
	CRR073312	Silver flowering 1	3.563
	CRR073313	Silver flowering 2	3.552
	CRR073314	Silver flowering 3	1.820
	CRR073315	Gold flowering 1	7.589
	CRR073316	Gold flowering 2	16.280
	CRR073317	Gold flowering 3	7.600
	CRR073318	Tawny withering 1	8.685
	CRR073319	Tawny withering 2	8.521
	CRR073320	Tawny withering 3	5.361