Gene detail

Detail information of GWHGAAZE017410

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009611770.1	0	PREDICTED: proline-rich receptor-like protein kinase PERK15 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9LV48\|PERK1_ARATH	0	Proline-rich receptor-like protein kinase PERK1
trEMBL	tr\|M0ZRH7\|M0ZRH7_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400006515}
TAIR10	AT3G24550.1	2E-153	proline extensin-like receptor kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	5890556	5895213	-
GWHAAZE00000005	mRNA	5890556	5895213	-
GWHAAZE00000005	exon	5894889	5895213	-
GWHAAZE00000005	exon	5893411	5893941	-
GWHAAZE00000005	exon	5893068	5893208	-
GWHAAZE00000005	exon	5892924	5892994	-
GWHAAZE00000005	exon	5892241	5892317	-
GWHAAZE00000005	exon	5891965	5892112	-
GWHAAZE00000005	exon	5891468	5891629	-
GWHAAZE00000005	exon	5890556	5890903	-
GWHAAZE00000005	CDS	5894889	5895213	-
GWHAAZE00000005	CDS	5893411	5893941	-
GWHAAZE00000005	CDS	5893068	5893208	-
GWHAAZE00000005	CDS	5892924	5892994	-
GWHAAZE00000005	CDS	5892241	5892317	-
GWHAAZE00000005	CDS	5891965	5892112	-
GWHAAZE00000005	CDS	5891468	5891629	-
GWHAAZE00000005	CDS	5890556	5890903	-

Transcript Sequence
>GWHTAAZE017430 ATGTCCTCGCTGTCACCGACTTCACCGCCTCCCCCGCCTCCGGTGAACACCACCACTCCGCTGTCCCCGGAGACTTCAATCGTCCCTCCACCACCACCGCCACCTGCGTCGCAGGGGAATGGAAGTTTGGGTCCCACATCTCCTCCGCCGCCGGGGGGCCAGTCTAACAATACAGCATTGATTGCCCTCGGGGTCGGAGTTGGGATTGGCGGGTCAATCGTTCTGCTTGCTGTGGGAATTTTTGTCTTCTGGTACAAGAGGAGGAAGCGACGCCGCGGGCGGGCAGGTTCCTATGACTATGAGGCACCTCCACAAGGCGCTAAAGATGACCTTGTTGGTGGTCAACGTCAGCTTTGGCAGCAGAGTTCCCCTCCACCAGTACAAAATATGGTTGGATTTGGACTGCCAAAGCCTACTTGCCCACCAAGCATTGCATCGAATCCCAATTTATATACAGTGGGTGGCCCACCACCACCCTCAGTAACCAGTAGCTCAAGCTCCGAGAACCAATTGCGACAACCATCACCTCAATTTGGTTTTGGTTTCTCAAACAGCATATTTACATATGAAGAACTTGCCCTGGCTACAGATGGTTTCTCCAACACCAACCTCCTCGGTCAAGGGGGTTTTGGGTATGTTCATAAAGGAGTCCTTCCGAATGGGAAAGAGGTTGCAATTAAGCAGCTAAAAGTTGGTAGTGGGCAAGGGGAGCGTGAATTTCAGGCTGAAGTGGAGATTATTAGTCGTGTTAATCATAAGCATCTTGTTTCACTAGTAGGATACTGTAGTTCTGGGGCTCAGAGAATACTGGTTTATGAGTTTGTTCCAAACAACACCATGGAGTTCCATTTACACGATTTCCATCTATTCTTTATAAATCTGGTCTCATCCAAGATGAATAAAATTGCAGAGAAGGGGCAAGCTCCTCTGAACTGGGAAACTAGGATGAGAATTGCTCTAGGAGCTGCAAAAGGATTGGCATATTTGCACGAGGACTGTCAGCCCAAGATTATACATCGTGATATCAAGGCTGCGAACATTCTTCTTGATAACAATTTTGAGGCAAAGCTTGCAGATTTTGGACTGGCACGTTTCACTTCTGATACTGATACTCATGTCTCTACCCGTGTAATGGGAACGTTTGGTTATTTAGCTCCAGAGTATGCTCTTTCGGGGAAACTAACTGATAAGTCGGATGTCTTCTCCTTCGGGGTTGTGCTTCTTGAATTAATCACCGGACGGCGACCCATTGATAAAGGTCAATTCTTTGTGGATGATAATATTGTTGACTGGGCAAGGCCTTTGATGGCACAAGCTTTGGATGATGGCAACTTTGATTCTGTAGCTGATGCAAGATTGCACAAGAATTATGATTCTGAAGAGATGGTTCGTATGGTTGCTTGTGCTGCTGTTTGTGTTCGTCATTTGGCACGGCGCAGACCTCGAATGAGCCAGATAGTTCGAGCTTTAGAGGGGAATATGTCTCTGGATGATTTAAATGAGGGCATTAGACCTGGACACAGTACTATATATGGTTCTCATGAAAGTGCAGATTATGACACTGCCCAGTACAGGGAAGACTTGAAGAAATTCACCAAGATGGCACTTGAAGGCCAGGAACCCAGCAACTCTAGTGAGTGCAGCGGTCCCACCAGTGACTTTGGCCAACATCCATCTGGCTCTAGCACTGACGGTCTTCAGACTACTCAAGATATTGGCTCGAGCACCGAAAGTCAACAAACACGAATTACTCAAAAAGACAGAAATCCAGAAATTGGTAAAAATTCGGGGAAAAGTTCTTGA

Network for GWHGAAZE017410

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	202	490	2.60E-44

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_PERK-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.893
	SRR3591706	second leaf	13.074
	SRR3591707	mature leaf	11.466
	SRR3591708	Shoot apex	13.460
	SRR3591709	Stem	15.009
	SRR3591710	White floral bud	15.437
	SRR3591711	White flower	23.784
	SRR3591712	Green floral bud	15.259
	SRR3591713	Yellow flower	20.134
SRP173429	SRR8316895	Juvenile bud stage	10.915
	SRR8316896	Juvenile bud stage	11.989
	SRR8316897	Juvenile bud stage	5.201
	SRR8316894	Third green stage	5.976
	SRR8316900	Third green stage	12.908
	SRR8316901	Third green stage	15.175
	SRR8316898	Complete white stage	7.156
	SRR8316899	Complete white stage	20.953
	SRR8316903	Complete white stage	10.291
	SRR8316902	Silver flowering stage	9.558
	SRR8316904	Silver flowering stage	13.011
	SRR8316905	Silver flowering stage	8.004
	SRR8316906	Gold flowering stage	23.291
	SRR8316907	Gold flowering stage	27.480
	SRR8316908	Gold flowering stage	26.689
SRP132670	SRR6706286	Control	15.224
	SRR6706287	Light intensity 50%	14.653
	SRR6706288	Light intensity 20%	15.438
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.018
	CNS0095593	Slightly white alabastrum(diploid) 2	10.172
	CNS0095594	Slightly white alabastrum(diploid) 3	9.433
	CNS0095595	Whole white alabastrum(diploid) 2	7.028
	CNS0095596	Whole white alabastrum(diploid) 3	7.128
	CNS0095597	Whole white alabastrum(diploid) 4	9.584
	CNS0095598	Silvery flower (diploied) 1	11.324
	CNS0095599	Silvery flower (diploied) 2	8.719
	CNS0095600	Silvery flower (diploied) 3	18.617
	CNS0095601	Golden flower (diploid) 1	11.181
	CNS0095602	Golden flower (diploid) 2	18.234
	CNS0095603	Golden flower (diploid) 3	17.217
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.774
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.133
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.181
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.600
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.616
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.342
	CNS0095610	Silvery flower (tetraploid) 1	16.633
	CNS0095611	Silvery flower (tetraploid) 2	15.818
	CNS0095612	Silvery flower (tetraploid) 3	9.498
	CNS0095613	Golden flower (tetraploid) 1	8.347
	CNS0095614	Golden flower (tetraploid) 2	13.399
	CNS0095615	Golden flower (tetraploid) 3	19.276
CRA001975	CRR073297	Stem 1	18.226
	CRR073298	Stem 2	16.570
	CRR073299	Stem 3	12.483
	CRR073300	Leaf 1	16.768
	CRR073301	Leaf 2	17.395
	CRR073302	Leaf 3	15.625
	CRR073303	Juvenile bud 1	15.746
	CRR073304	Juvenile bud 2	13.737
	CRR073305	Juvenile bud 3	16.954
	CRR073306	Third green 1	10.078
	CRR073307	Third green 2	8.664
	CRR073308	Third green 3	9.960
	CRR073309	Second white 1	4.681
	CRR073310	Second white 2	5.862
	CRR073311	Second white 3	2.897
	CRR073312	Silver flowering 1	2.792
	CRR073313	Silver flowering 2	2.279
	CRR073314	Silver flowering 3	3.070
	CRR073315	Gold flowering 1	5.258
	CRR073316	Gold flowering 2	10.091
	CRR073317	Gold flowering 3	4.475
	CRR073318	Tawny withering 1	8.804
	CRR073319	Tawny withering 2	8.029
	CRR073320	Tawny withering 3	7.632