Gene detail

Detail information of GWHGAAZE017408

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002279221.1	0	PREDICTED: protein disulfide isomerase-like 1-6 [Vitis vinifera]
Swissprot	tr\|Q66GQ3\|PDI16_ARATH	0	Protein disulfide isomerase-like 1-6 (Precursor)
trEMBL	tr\|D7U0H4\|D7U0H4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI36120.3}
TAIR10	AT3G16110.1	3E-145	PDI-like 1-6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	5866472	5871105	+
GWHAAZE00000005	mRNA	5866472	5871105	+
GWHAAZE00000005	exon	5866472	5866986	+
GWHAAZE00000005	exon	5867164	5867293	+
GWHAAZE00000005	exon	5868213	5868378	+
GWHAAZE00000005	exon	5868735	5868853	+
GWHAAZE00000005	exon	5869070	5869150	+
GWHAAZE00000005	exon	5869236	5869325	+
GWHAAZE00000005	exon	5869435	5869506	+
GWHAAZE00000005	exon	5869591	5869659	+
GWHAAZE00000005	exon	5869949	5870029	+
GWHAAZE00000005	exon	5870869	5870922	+
GWHAAZE00000005	exon	5871007	5871105	+
GWHAAZE00000005	CDS	5866472	5866986	+
GWHAAZE00000005	CDS	5867164	5867293	+
GWHAAZE00000005	CDS	5868213	5868378	+
GWHAAZE00000005	CDS	5868735	5868853	+
GWHAAZE00000005	CDS	5869070	5869150	+
GWHAAZE00000005	CDS	5869236	5869325	+
GWHAAZE00000005	CDS	5869435	5869506	+
GWHAAZE00000005	CDS	5869591	5869659	+
GWHAAZE00000005	CDS	5869949	5870029	+
GWHAAZE00000005	CDS	5870869	5870922	+
GWHAAZE00000005	CDS	5871007	5871105	+

Transcript Sequence
>GWHTAAZE017428 ATGTATACTCCAAAACCCAATTCAAAATTCATCATCTCTCTTACTCTCGCAATAGTACTCTTCCTATCACTCACTTGTTCTTCTTCTTCTGATTATGATTCTGATCCCACCACCACTGATGACGAAATTGACCAACTCATAGCATTAGATGAAGAACAAGAAGCAGAAGAAGAAAAAGAAAAATCACAGCAACAAGGAGGCACTCATCAAGTAAAGCCATCTGAGGCCGAAGCTTTAAGCAAGGCCCAAAGGATAGTCCTTGAACTAAACAATGACAATACGAAGAAATTCATTGATGAAAATCAGTACGTTCTAGTTCTAGGTTATGCACCTTGGTGCCCTAGGAGTGCTGAATTAATGCCTCGATTTGCAGAGGCTGCTACTTCTCTTAAGGACCTTGGGAATCCCCTTGTGCTCGCAAAACTTGATGCAGAGCGATATCCAAAGGCCGCTTCGGTTCTCGAGATCAAAGGATTTCCCACTCTGCTTCTGTTTGTTAATGGCACTCCTACTCAGGAAGAAATTGTGATATGGGCAAGGAAGAAGACGGGTATGCCTGTTATTAGAATTACTTCAATAATTGAAGCAGAGGAATTTCGGAAGAAGCATCCTATGTATGTCGTTGGTCTATTTGAGAAATTTGAGGGTCCTGATTATGAAGAATTTGTAAAAGCATCAACTTCTGACAACGAGATTCAATTTGTTGTAACGGACAGCACTGAAATTGCCAGTGTTCTATTCCCACATATGAAGCCTGCTAATATTTTCCTTGGTCTTGTTAAGAGCGAGGTGGAAAGATACACTACTTTTGAAGACACCTTCAAAACGGACAAAATCATGCAGTTTTTGGACAACAACAAGTTCCCTTTGGTCACCATACTGACTGAACTTAATTCTGCCAGAGTTTACTCCAGTCCAAACAAACTCCAGGTTTATGTATTTGCGGAAGCAGAGAGGTTCAAGAAACTTTTGGAGCCTTTCCAAAATGTTGCAAGGAAGTTCAAATCAAAGATAATGTTTGTATTTGTCGACATTAAAGAGGAAAACCTAGCAAAGCCTTTCCTAACTTTATTTGGGCTTGAAGAATCAGAAGACACTGTTGTAACTGCTTTCGATTACAAGATCAGCATAAAGTATTTGCTGGAATCAGATCCCACACCGGCAAAGATAGAAGAGTTTTGCTTGGGAATTCTGAGTGGTAGTTTATCACCATACTACAAATCACAGCCAATTCCAGATAATGAAGAGGCAAGCATTCTGACCATAGTGGGAAGGACATTTGACGACTTGGTTCTAAGCAGTCCTAAGAACATTCTTATTGAGGTAGATGACTATCCGACGCTGCTGTTCTACCCAGAAGGAGACAAATCAAATCCAGTCAAGCTTCCTTCAAAAGCTAGCTTGAAGGAATTGGCAACACTAATCAACAAGAATTTGAAATCCCAGGATCATCATATAACCAAAGATGAACTATAA

Network for GWHGAAZE017408

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00085.21	Thioredoxin	86	173	4.30E-14
PF13848.7	Thioredoxin_6	211	394	1.90E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09580	PDIA1, P4HB	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0045454	biological_process	cell redox homeostasis

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	69.338
	SRR3591706	second leaf	37.418
	SRR3591707	mature leaf	29.293
	SRR3591708	Shoot apex	47.181
	SRR3591709	Stem	35.234
	SRR3591710	White floral bud	44.290
	SRR3591711	White flower	37.126
	SRR3591712	Green floral bud	46.327
	SRR3591713	Yellow flower	36.364
SRP173429	SRR8316895	Juvenile bud stage	25.725
	SRR8316896	Juvenile bud stage	32.905
	SRR8316897	Juvenile bud stage	14.673
	SRR8316894	Third green stage	16.723
	SRR8316900	Third green stage	42.677
	SRR8316901	Third green stage	40.418
	SRR8316898	Complete white stage	18.562
	SRR8316899	Complete white stage	47.261
	SRR8316903	Complete white stage	34.181
	SRR8316902	Silver flowering stage	15.643
	SRR8316904	Silver flowering stage	27.907
	SRR8316905	Silver flowering stage	12.864
	SRR8316906	Gold flowering stage	37.156
	SRR8316907	Gold flowering stage	33.064
	SRR8316908	Gold flowering stage	41.907
SRP132670	SRR6706286	Control	20.271
	SRR6706287	Light intensity 50%	19.865
	SRR6706288	Light intensity 20%	21.514
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.399
	CNS0095593	Slightly white alabastrum(diploid) 2	25.933
	CNS0095594	Slightly white alabastrum(diploid) 3	26.290
	CNS0095595	Whole white alabastrum(diploid) 2	24.000
	CNS0095596	Whole white alabastrum(diploid) 3	20.272
	CNS0095597	Whole white alabastrum(diploid) 4	20.596
	CNS0095598	Silvery flower (diploied) 1	26.916
	CNS0095599	Silvery flower (diploied) 2	20.227
	CNS0095600	Silvery flower (diploied) 3	28.496
	CNS0095601	Golden flower (diploid) 1	16.991
	CNS0095602	Golden flower (diploid) 2	28.338
	CNS0095603	Golden flower (diploid) 3	26.802
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.818
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.261
	CNS0095606	Slightly white alabastrum(tetraploid) 3	44.750
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.202
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.711
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.888
	CNS0095610	Silvery flower (tetraploid) 1	29.259
	CNS0095611	Silvery flower (tetraploid) 2	29.274
	CNS0095612	Silvery flower (tetraploid) 3	25.091
	CNS0095613	Golden flower (tetraploid) 1	17.429
	CNS0095614	Golden flower (tetraploid) 2	27.134
	CNS0095615	Golden flower (tetraploid) 3	21.857
CRA001975	CRR073297	Stem 1	17.351
	CRR073298	Stem 2	19.531
	CRR073299	Stem 3	15.901
	CRR073300	Leaf 1	23.472
	CRR073301	Leaf 2	20.886
	CRR073302	Leaf 3	18.046
	CRR073303	Juvenile bud 1	16.878
	CRR073304	Juvenile bud 2	15.485
	CRR073305	Juvenile bud 3	21.583
	CRR073306	Third green 1	6.956
	CRR073307	Third green 2	6.763
	CRR073308	Third green 3	9.108
	CRR073309	Second white 1	6.848
	CRR073310	Second white 2	11.243
	CRR073311	Second white 3	9.409
	CRR073312	Silver flowering 1	5.443
	CRR073313	Silver flowering 2	5.246
	CRR073314	Silver flowering 3	6.168
	CRR073315	Gold flowering 1	4.394
	CRR073316	Gold flowering 2	7.566
	CRR073317	Gold flowering 3	4.298
	CRR073318	Tawny withering 1	18.477
	CRR073319	Tawny withering 2	17.412
	CRR073320	Tawny withering 3	15.082