Gene detail

Detail information of GWHGAAZE017396

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006583058.1	1.15902E-51	PREDICTED: peroxisome biogenesis protein 2-like isoform X3 [Glycine max]
Swissprot	tr\|Q9CA86\|PEX2_ARATH	3E-40	Peroxisome biogenesis protein 2
trEMBL	tr\|I1KV48\|I1KV48_SOYBN	6E-44	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G21760.1}
TAIR10	AT1G79810.1	6E-31	Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	5662066	5666785	+
GWHAAZE00000005	mRNA	5662066	5666785	+
GWHAAZE00000005	exon	5662066	5662081	+
GWHAAZE00000005	exon	5663453	5663547	+
GWHAAZE00000005	exon	5664006	5664127	+
GWHAAZE00000005	exon	5664212	5664358	+
GWHAAZE00000005	exon	5665561	5665678	+
GWHAAZE00000005	exon	5666012	5666178	+
GWHAAZE00000005	exon	5666375	5666785	+
GWHAAZE00000005	CDS	5662066	5662081	+
GWHAAZE00000005	CDS	5663453	5663547	+
GWHAAZE00000005	CDS	5664006	5664127	+
GWHAAZE00000005	CDS	5664212	5664358	+
GWHAAZE00000005	CDS	5665561	5665678	+
GWHAAZE00000005	CDS	5666012	5666107	+
GWHAAZE00000005	three_prime_UTR	5666108	5666178	+
GWHAAZE00000005	three_prime_UTR	5666375	5666785	+

Transcript Sequence
>GWHTAAZE017416 ATGAATGAAATTAGAGTCAGCCATTCCAATTGCCATATCAAGATTAATCAGATTGATGCAGCCAGACTGGACGTTGAAATGTCCGCCATGTTGAAAGAACAGCTGGTTAAGAGGGACCTGGACTTTCTGTTGCTCAGAAGATATGGTATTGTGTTGCCACTGTTGGTGGCTAGTATATCTGGGCCCGTCTACAATCTTTTTCTGCTTTTCACCGATAGGGTGATTCTGAGCAGAGGGAGGATCCAGCAATTTAATCATTCTCCTTGGCCTGTTCGTCAGAGGTCTGTGGCACATCGATCACGGTATTCACTACAGCGTATAGAAGGATTTTATACAGCTGCATCTTTTAGCAACCTGCTCATATTTCTTTGCACAGGAAGGTTTAGAAATCTAATTGAGAGAGCTCTAAAAGCAAGACTTGCCTACAGTAGCCCTCAGATGAACCGAGCTGTTAGTTTTGAGTACATGAATTGCCAGTTGGTCTGGAATGAATTCCCGGAAGTATTGTTGCTGCTTCTTCCGCTTCTCAGTTCATCATCAATAAAAAGTTACCTTTGTCCATTCACGAAGGATAAATCATTGAGCTTTGCATAGGATGAAACGTTATGCCCCATTTGCCAGGCAAATCCGACCATTCCATTTTTAGCTCTCCCTTGTCAGCACAGTTATTGTTGCTACTGTCTTCAAACTCTGTGCTCAGCAGTTCAGTCGTTCCGGTGCTCCAGATGCAGTGAACCAGTTATCGCTATGCAACGGCATGGTGGTTCAAACAACGTTGTTACTTAACAAAATTAATTATTTCACAGGGAGAATTTAAAATTAAATAAATCAATTAAATGTTGTATAAGAATATGCCTGCAGGCGGCATTACTATTATTTAGTTAAGGAACTTGAAAATCATATGTTCCTTTTTATTGAGTGCATTAATTCTTTTTGCAACTTTAAATTACCTCCTGCAAGGTGGATGATTTACTAAAAAATAAAAATAAAATTGGTTTCTTCAACTGACAACTTTGTTCAGAGTGTATATAATTTTTTTTAATGGATAAAGTTGGTCAATATTTTCCTGCTGTAAA

Network for GWHGAAZE017396

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04757.15	Pex2_Pex12	103	186	2.10E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06664	PEX2, PXMP3	Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.061
	SRR3591706	second leaf	0.051
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.489
	SRR3591710	White floral bud	0.614
	SRR3591711	White flower	0.379
	SRR3591712	Green floral bud	0.362
	SRR3591713	Yellow flower	0.495
SRP173429	SRR8316895	Juvenile bud stage	0.440
	SRR8316896	Juvenile bud stage	0.672
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.267
	SRR8316900	Third green stage	0.752
	SRR8316901	Third green stage	1.130
	SRR8316898	Complete white stage	0.817
	SRR8316899	Complete white stage	1.411
	SRR8316903	Complete white stage	0.940
	SRR8316902	Silver flowering stage	0.353
	SRR8316904	Silver flowering stage	0.306
	SRR8316905	Silver flowering stage	0.326
	SRR8316906	Gold flowering stage	0.300
	SRR8316907	Gold flowering stage	0.284
	SRR8316908	Gold flowering stage	0.190
SRP132670	SRR6706286	Control	0.215
	SRR6706287	Light intensity 50%	0.618
	SRR6706288	Light intensity 20%	0.196
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.125
	CNS0095593	Slightly white alabastrum(diploid) 2	2.248
	CNS0095594	Slightly white alabastrum(diploid) 3	1.230
	CNS0095595	Whole white alabastrum(diploid) 2	1.500
	CNS0095596	Whole white alabastrum(diploid) 3	0.316
	CNS0095597	Whole white alabastrum(diploid) 4	1.103
	CNS0095598	Silvery flower (diploied) 1	0.200
	CNS0095599	Silvery flower (diploied) 2	0.990
	CNS0095600	Silvery flower (diploied) 3	0.307
	CNS0095601	Golden flower (diploid) 1	0.204
	CNS0095602	Golden flower (diploid) 2	0.197
	CNS0095603	Golden flower (diploid) 3	0.133
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.308
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.614
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.327
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.447
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.971
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.226
	CNS0095610	Silvery flower (tetraploid) 1	0.773
	CNS0095611	Silvery flower (tetraploid) 2	0.052
	CNS0095612	Silvery flower (tetraploid) 3	0.344
	CNS0095613	Golden flower (tetraploid) 1	0.124
	CNS0095614	Golden flower (tetraploid) 2	0.004
	CNS0095615	Golden flower (tetraploid) 3	0.220
CRA001975	CRR073297	Stem 1	0.942
	CRR073298	Stem 2	0.700
	CRR073299	Stem 3	0.117
	CRR073300	Leaf 1	0.541
	CRR073301	Leaf 2	0.794
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.024
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.279
	CRR073306	Third green 1	0.246
	CRR073307	Third green 2	0.006
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.006
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.444
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.194
	CRR073320	Tawny withering 3	0.060